Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0665
(432 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 2.8
SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein Bqt1|Sc... 26 2.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 3.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 3.8
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 3.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 3.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 3.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 3.8
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ... 25 3.8
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 25 3.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 3.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 3.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 3.8
SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyc... 25 3.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 3.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 3.8
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 25 5.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 6.6
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 24 8.7
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ... 24 8.7
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 2.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 192 WFICWLSISSNFSYLTI*IKYVSQFLHSFRSLHFVMHFISTRCNRLS 52
+ + +LS S +FS+L + + SF LHF+ F C LS
Sbjct: 122 FLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLS 168
>SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein
Bqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 25.8 bits (54), Expect = 2.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 14 YARRYQKYDCDLTESRLHLVLIKCITKWR 100
++RR Q Y ++ H+ L+K + KWR
Sbjct: 99 WSRRLQGYQSITVQNGSHVPLVKRLEKWR 127
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 264 NYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 359
N++ D L ++I + PIPKDS D + FV++
Sbjct: 823 NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 264 NYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 359
N++ D L ++I + PIPKDS D + FV++
Sbjct: 823 NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 264 NYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 359
N++ D L ++I + PIPKDS D + FV++
Sbjct: 823 NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 264 NYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 359
N++ D L ++I + PIPKDS D + FV++
Sbjct: 823 NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 264 NYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 359
N++ D L ++I + PIPKDS D + FV++
Sbjct: 823 NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 264 NYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 359
N++ D L ++I + PIPKDS D + FV++
Sbjct: 823 NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 227
Score = 25.4 bits (53), Expect = 3.8
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -1
Query: 255 RAKFFIMSLAFLVIIAHNKLEWFICWLSISSNFSYLTI*IKYVSQFLHSFRSLHFVM 85
R +FIM++ ++I + F WLS S FS+ I + + SF+ + F++
Sbjct: 47 RLVYFIMAVMVFLVI----FDGFPFWLSAFSIFSHYIYKINFDTFPFFSFKRMRFLL 99
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.4 bits (53), Expect = 3.8
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +3
Query: 300 LQKLPIPKDSNDGTF---IFVSKDYDKKDVLLILIHGS 404
+ +PI +DS F + S ++ +KD LL+++H S
Sbjct: 453 ITNMPILRDSVSNVFNNQVLCSSNFFQKDNLLVIVHES 490
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 264 NYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 359
N++ D L ++I + PIPKDS D + FV++
Sbjct: 823 NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 264 NYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 359
N++ D L ++I + PIPKDS D + FV++
Sbjct: 823 NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 264 NYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 359
N++ D L ++I + PIPKDS D + FV++
Sbjct: 823 NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 3.8
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +1
Query: 73 ANKVHYKMEGTKTMKELGYIFDSNGQVRKIGADGQPTDEP--FQFVVSND--HQECQAHY 240
A+ + ME +K GY DS G + G D+P +QF D ++E +A
Sbjct: 14 ASNQNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDEIYKELEAQD 73
Query: 241 EELGSQSPIMFMI 279
L + + ++ M+
Sbjct: 74 SRLYTANGLLKML 86
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 264 NYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 359
N++ D L ++I + PIPKDS D + FV++
Sbjct: 823 NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 264 NYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 359
N++ D L ++I + PIPKDS D + FV++
Sbjct: 823 NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 25.0 bits (52), Expect = 5.0
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +3
Query: 249 WLAITNYVYDILQTQIGLQKLPIPKDSNDGTFIFVSKDYDKKDVLLILIHGSG 407
W+A ++ D++ + P D N T I + Y D+L IL+ G
Sbjct: 9 WIAASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGG 61
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 24.6 bits (51), Expect = 6.6
Identities = 13/56 (23%), Positives = 31/56 (55%)
Frame = +1
Query: 205 VSNDHQECQAHYEELGSQSPIMFMIFFRLRLDCKSYQSQRIQMMEHLFLFQKIMIK 372
+SN + E + + + SQ+ + +L+ DC++ Q + +++++ QK+M K
Sbjct: 792 ISNLYHELRDDHVNMQSQNNTLLESESKLKTDCENLTQQNMTLIDNV---QKLMHK 844
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 209 LTTNWNGSSVGCPSAPIFLT*PFESNMYPSSFIV 108
+ TNW+ +S G P + T P N S+ V
Sbjct: 192 ILTNWDATSYGSPKPHVLYTIPTGQNPTGSTLSV 225
>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +1
Query: 172 GQPTDEPFQFVVSNDHQECQAHYEELGSQSPIMFMIFFR 288
G P P + + N H E + L S IM ++F+
Sbjct: 229 GLPLGHPLKVEIFNSHTEYIITWYSLSVVSAIMLYVYFK 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,801,050
Number of Sequences: 5004
Number of extensions: 35924
Number of successful extensions: 103
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -