Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0665
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21753| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   4e-11
SB_13223| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   1e-10
SB_1581| Best HMM Match : No HMM Matches (HMM E-Value=.)               63   1e-10
SB_55836| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)           29   2.2  
SB_58100| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_48639| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_21753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 276

 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 31/63 (49%), Positives = 46/63 (73%), Gaps = 3/63 (4%)
 Frame = +3

Query: 252 LAITNYVYDILQTQIGLQKLPIPKDSNDGT---FIFVSKDYDKKDVLLILIHGSGVVRAG 422
           L IT++VY +L+ + GL+++ +P D  +     FIF+S+D  + + L+ILIHGSGVVRAG
Sbjct: 82  LVITDHVYKLLEEKAGLKRVYVPIDPRENESVGFIFMSEDALRAEKLMILIHGSGVVRAG 141

Query: 423 QWA 431
           QWA
Sbjct: 142 QWA 144


>SB_13223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 30/61 (49%), Positives = 45/61 (73%), Gaps = 3/61 (4%)
 Frame = +3

Query: 258 ITNYVYDILQTQIGLQKLPIPKDSNDGT---FIFVSKDYDKKDVLLILIHGSGVVRAGQW 428
           IT++VY +L+ + GL+++ +P D  +     FIF+S+D  + + L+ILIHGSGVVRAGQW
Sbjct: 2   ITDHVYKLLEEKAGLKRVYVPIDPRENESVGFIFMSEDALRAEKLMILIHGSGVVRAGQW 61

Query: 429 A 431
           A
Sbjct: 62  A 62


>SB_1581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 30/61 (49%), Positives = 45/61 (73%), Gaps = 3/61 (4%)
 Frame = +3

Query: 258 ITNYVYDILQTQIGLQKLPIPKDSNDGT---FIFVSKDYDKKDVLLILIHGSGVVRAGQW 428
           IT++VY +L+ + GL+++ +P D  +     FIF+S+D  + + L+ILIHGSGVVRAGQW
Sbjct: 2   ITDHVYKLLEEKAGLKRVYVPIDPRENESVGFIFMSEDALRAEKLMILIHGSGVVRAGQW 61

Query: 429 A 431
           A
Sbjct: 62  A 62


>SB_55836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 24  DIKSTTATSQKVDCI*C**SALQNGGNENYEGTGIH 131
           DIK+   TS+++ C+        NG N N  G G++
Sbjct: 349 DIKNVKVTSRQISCVATEGDCFDNGSNNNGSGYGVN 384


>SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)
          Length = 889

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 264 NYVYDILQTQIGLQKLPIPKDSNDGTFIFVSKDYDKKDVLLILIHGSGVVRA 419
           N ++ I Q +  + K P+PK + +GT     KD  K +V+  L   S ++ A
Sbjct: 245 NVIFSIAQPKAFVSK-PVPKSATNGTLKKHKKDTKKFNVIQFLTTNSFIILA 295


>SB_58100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 256 QSPIMFMIFFRLRLDCKSY 312
           + PI F+ FFR  +DCK Y
Sbjct: 9   REPIRFVYFFRSMIDCKYY 27


>SB_48639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +1

Query: 184 DEPFQFVVSNDHQECQAHYEELGSQSPIMFMIFFRLRLDCKSYQSQRIQMMEHLFLFQKI 363
           +EPFQ +V N  +E   H+E+      I   IF       + Y  +++      F  ++ 
Sbjct: 3   EEPFQTIVKNFMEEHYQHFEDTEENKLIYTDIFKEYVNKIEKYIDEQLHRRMQSFNMEEF 62

Query: 364 M 366
           M
Sbjct: 63  M 63


>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 49  HRKSIASSANKVHYKMEGTKTMKELGYIFDSNGQVRKIGADGQ 177
           H  S++  A K+H+KMEG+      G+ F+  G       DG+
Sbjct: 60  HEVSLSKDAMKLHFKMEGSVN----GHCFEIQGVGEGKAFDGE 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,103,490
Number of Sequences: 59808
Number of extensions: 249330
Number of successful extensions: 639
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)