Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0665
         (432 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061267-1|AAL28815.1|  325|Drosophila melanogaster LD19518p pro...    48   7e-06
AE014297-1479|AAF54777.1|  309|Drosophila melanogaster CG10038-P...    48   7e-06
AE014297-1478|AAF54778.2|  325|Drosophila melanogaster CG10038-P...    48   7e-06
AY118365-1|AAM48394.1| 1041|Drosophila melanogaster RE09732p pro...    28   6.2  
AE014297-257|AAF52022.2| 1041|Drosophila melanogaster CG14670-PA...    28   6.2  

>AY061267-1|AAL28815.1|  325|Drosophila melanogaster LD19518p
           protein.
          Length = 325

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +1

Query: 112 MKELGYIFDSNGQVRKIG-ADGQPTDEPFQFVVSNDHQECQAHYEELGSQSP 264
           +K  GY FD  G +RK+  A G+P  E F + VS+D  E + HY++L +Q P
Sbjct: 34  LKNFGYAFDGEGVLRKVDPATGEPGKELFSYNVSDDAAENEKHYQKLANQIP 85



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +3

Query: 258 ITNYVYDILQTQIGLQKLPIPKDS--NDGTFIFVSK-DYDKKDVLLILIHGSGVVRAGQW 428
           I   VY +L+   GL +  IP D      +F+F       +   LL+LIHGSG V+AGQW
Sbjct: 84  IPEIVYALLEKN-GLSRTYIPFDQPPERSSFVFSQPAKLSQSKKLLVLIHGSGYVKAGQW 142

Query: 429 A 431
           A
Sbjct: 143 A 143


>AE014297-1479|AAF54777.1|  309|Drosophila melanogaster CG10038-PB,
           isoform B protein.
          Length = 309

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +1

Query: 112 MKELGYIFDSNGQVRKIG-ADGQPTDEPFQFVVSNDHQECQAHYEELGSQSP 264
           +K  GY FD  G +RK+  A G+P  E F + VS+D  E + HY++L +Q P
Sbjct: 18  LKNFGYAFDGEGVLRKVDPATGEPGKELFSYNVSDDAAENEKHYQKLANQIP 69



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +3

Query: 258 ITNYVYDILQTQIGLQKLPIPKDS--NDGTFIFVSK-DYDKKDVLLILIHGSGVVRAGQW 428
           I   VY +L+   GL +  IP D      +F+F       +   LL+LIHGSG V+AGQW
Sbjct: 68  IPEIVYALLEKN-GLSRTYIPFDQPPERSSFVFSQPAKLSQSKKLLVLIHGSGYVKAGQW 126

Query: 429 A 431
           A
Sbjct: 127 A 127


>AE014297-1478|AAF54778.2|  325|Drosophila melanogaster CG10038-PA,
           isoform A protein.
          Length = 325

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +1

Query: 112 MKELGYIFDSNGQVRKIG-ADGQPTDEPFQFVVSNDHQECQAHYEELGSQSP 264
           +K  GY FD  G +RK+  A G+P  E F + VS+D  E + HY++L +Q P
Sbjct: 34  LKNFGYAFDGEGVLRKVDPATGEPGKELFSYNVSDDAAENEKHYQKLANQIP 85



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +3

Query: 258 ITNYVYDILQTQIGLQKLPIPKDS--NDGTFIFVSK-DYDKKDVLLILIHGSGVVRAGQW 428
           I   VY +L+   GL +  IP D      +F+F       +   LL+LIHGSG V+AGQW
Sbjct: 84  IPEIVYALLEKN-GLSRTYIPFDQPPERSSFVFSQPAKLSQSKKLLVLIHGSGYVKAGQW 142

Query: 429 A 431
           A
Sbjct: 143 A 143


>AY118365-1|AAM48394.1| 1041|Drosophila melanogaster RE09732p
           protein.
          Length = 1041

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 319 QRIQMMEHLFLFQKIMIKKMF 381
           QR++MM H+F +Q   +KK F
Sbjct: 563 QRVKMMHHIFCYQPSPVKKHF 583


>AE014297-257|AAF52022.2| 1041|Drosophila melanogaster CG14670-PA
           protein.
          Length = 1041

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 319 QRIQMMEHLFLFQKIMIKKMF 381
           QR++MM H+F +Q   +KK F
Sbjct: 563 QRVKMMHHIFCYQPSPVKKHF 583


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,272,219
Number of Sequences: 53049
Number of extensions: 385194
Number of successful extensions: 965
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1355285490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)