Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0665
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-30|CAA22091.1|  313|Caenorhabditis elegans Hypothetical...    63   7e-11
U41007-4|AAA82266.1|  659|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z93379-10|CAB07594.1|  508|Caenorhabditis elegans Hypothetical p...    27   4.4  
Z92830-17|CAB07364.1|  508|Caenorhabditis elegans Hypothetical p...    27   4.4  
Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical pr...    27   4.4  
X65055-1|CAA46191.1| 1254|Caenorhabditis elegans P-glycoprotein ...    27   4.4  

>AL033514-30|CAA22091.1|  313|Caenorhabditis elegans Hypothetical
           protein Y75B8A.31 protein.
          Length = 313

 Score = 63.3 bits (147), Expect = 7e-11
 Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 5/64 (7%)
 Frame = +3

Query: 255 AITNYVYDILQTQIGLQ----KLPIPKDSN-DGTFIFVSKDYDKKDVLLILIHGSGVVRA 419
           A+   VY++L+T+ GL+    KLP   D + D +FIFVSK++ K   LL+LIHGSGVVRA
Sbjct: 40  AVDLEVYELLETRCGLKRKALKLPGKTDEDEDLSFIFVSKNFKKAANLLVLIHGSGVVRA 99

Query: 420 GQWA 431
           GQWA
Sbjct: 100 GQWA 103


>U41007-4|AAA82266.1|  659|Caenorhabditis elegans Hypothetical
           protein C33H5.9 protein.
          Length = 659

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +1

Query: 37  RLRPHRKSIASSANKVHYKM-EGTKTMKELGYIFDS-NGQVRKIGADGQPTDEPFQFVVS 210
           ++   +K      +++H K  E    MK+L +   + + +V  +G   +  D+P     +
Sbjct: 27  QMNEEKKDYVQKLHRLHEKNGEAIDKMKQLDHTMQAVSTKVVHLGDQLESVDQPRSR--A 84

Query: 211 NDHQECQAHYEELGSQSPIMFMIF 282
           +D  +   H++E  S  P+  MIF
Sbjct: 85  HDAHQLMQHFDEFLSDQPLNSMIF 108


>Z93379-10|CAB07594.1|  508|Caenorhabditis elegans Hypothetical
           protein F21H7.2 protein.
          Length = 508

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 306 KLPIPKDSNDGTFIFVSKDYDKKD 377
           K P  KD+     +F+S D DKKD
Sbjct: 128 KKPAKKDTGTAVAVFISDDEDKKD 151


>Z92830-17|CAB07364.1|  508|Caenorhabditis elegans Hypothetical
           protein F21H7.2 protein.
          Length = 508

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 306 KLPIPKDSNDGTFIFVSKDYDKKD 377
           K P  KD+     +F+S D DKKD
Sbjct: 128 KKPAKKDTGTAVAVFISDDEDKKD 151


>Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical
           protein ZK455.7 protein.
          Length = 1268

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 312 PIPKDSNDGTFIFVSKDYDKKDVLL 386
           P P+DS  G F  V +D D KD +L
Sbjct: 21  PSPQDSYQGNFFDVFRDADYKDYIL 45


>Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical
           protein ZK455.7 protein.
          Length = 1268

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 312 PIPKDSNDGTFIFVSKDYDKKDVLL 386
           P P+DS  G F  V +D D KD +L
Sbjct: 21  PSPQDSYQGNFFDVFRDADYKDYIL 45


>X65055-1|CAA46191.1| 1254|Caenorhabditis elegans P-glycoprotein C
           protein.
          Length = 1254

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 312 PIPKDSNDGTFIFVSKDYDKKDVLL 386
           P P+DS  G F  V +D D KD +L
Sbjct: 21  PSPQDSYQGNFFDVFRDADYKDYIL 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,031,292
Number of Sequences: 27780
Number of extensions: 203515
Number of successful extensions: 494
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)