Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0665
         (432 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   0.63 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   4.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.8  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   7.8  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   7.8  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   7.8  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   7.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 220 GDHCSQQIGMVHLLAVHQLQFFLLDH 143
           G H  QQ+   H+L+  QLQ F+  H
Sbjct: 70  GIHQMQQLLQQHILSPTQLQSFMQQH 95


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 217 DHCSQQIGMVHLLAVHQLQFF 155
           D C +  G  H+L +HQ+  +
Sbjct: 235 DICGKSFGYNHVLKLHQVAHY 255


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 235 HYEELGSQSPIMFMIFFRLRLDC 303
           HY  L     I++M+   L+L C
Sbjct: 141 HYLWLYKDKTILYMVKLTLKLSC 163


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 169 QLQFFLLDHLNQICIPV 119
           +LQ++ ++++ QI IPV
Sbjct: 109 KLQYYNINYIEQIPIPV 125


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 169 QLQFFLLDHLNQICIPV 119
           +LQ++ ++++ QI IPV
Sbjct: 109 KLQYYNINYIEQIPIPV 125


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 169 QLQFFLLDHLNQICIPV 119
           +LQ++ ++++ QI IPV
Sbjct: 109 KLQYYNINYIEQIPIPV 125


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 169 QLQFFLLDHLNQICIPV 119
           +LQ++ ++++ QI IPV
Sbjct: 109 KLQYYNINYIEQIPIPV 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,075
Number of Sequences: 438
Number of extensions: 2902
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)