Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0665
         (432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47910.1 68418.m05918 respiratory burst oxidase protein D (Rb...    29   1.4  
At1g42540.1 68414.m04905 glutamate receptor family protein (GLR3...    28   2.4  
At2g47980.1 68415.m06004 expressed protein                             27   4.1  
At2g47270.1 68415.m05902 expressed protein                             27   5.5  
At1g51350.1 68414.m05775 armadillo/beta-catenin repeat family pr...    27   5.5  
At1g78210.1 68414.m09114 hydrolase, alpha/beta fold family prote...    27   7.2  
At5g13950.1 68418.m01631 expressed protein                             26   9.6  

>At5g47910.1 68418.m05918 respiratory burst oxidase protein D
           (RbohD) / NADPH oxidase identical to respiratory burst
           oxidase protein D from Arabidopsis thaliana [gi:3242789]
          Length = 921

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 279 ILQTQIGLQKLPIPKDSNDGTFIFVSKDYDKKDVLLILIHGSG 407
           +L+   G   LP PK   DG +   ++DY K DV+L++  G G
Sbjct: 705 LLRADGGDGNLPFPKVLIDGPYGAPAQDYKKYDVVLLVGLGIG 747


>At1g42540.1 68414.m04905 glutamate receptor family protein (GLR3.3)
           plant glutamate receptor family, PMID:11379626
          Length = 933

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +1

Query: 4   HEAVRTSISKVRLRPHRKSIASSANKVHYKMEGTKTMKELGYIFDSNGQVRKIG 165
           H  + T + ++     + ++++S    H    G    K  G++F +NG+  KIG
Sbjct: 416 HSGLSTVLPELLYTKEKPNMSTSPKLKHVIWPGETFTKPRGWVFSNNGKELKIG 469


>At2g47980.1 68415.m06004 expressed protein
          Length = 1098

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 20  RRYQKYDCDLTESRLHLVLIKCITKWRE 103
           R Y +Y  +L+  R    + KC+ +WRE
Sbjct: 893 RAYHRYSSELSSGREESRVDKCLEEWRE 920


>At2g47270.1 68415.m05902 expressed protein
          Length = 102

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 1   RHEAVRTSISKVRLRPHRKSIASSANKVHYKMEGTKTMKEL 123
           R  A R  + K+ +RP RKS+ +S           KT+KEL
Sbjct: 19  RQRARRALVKKIMIRP-RKSVEASRRPCRAIHRRVKTLKEL 58


>At1g51350.1 68414.m05775 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 666

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 86  CTLLALDAIDFL*GRSRTFDIDVRTASC 3
           C+ L+L  +D L    R  D DVR A+C
Sbjct: 358 CSFLSLQVLDLLTDALRHKDADVRAAAC 385


>At1g78210.1 68414.m09114 hydrolase, alpha/beta fold family protein
           low similarity to hydrolases from Rhodococcus sp. EtbD2
           GI:3273241, EtbD1 GI:3273239; contains Pfam profile
           PF00561: hydrolase, alpha/beta fold family
          Length = 314

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +3

Query: 312 PIPKDSNDGTFI--FVSKDY--DKKDVLLILIHGSGVVRAGQW 428
           P+  D  DGT +  +VSK     K    L+LIHG G     QW
Sbjct: 26  PVTIDLKDGTVVNFWVSKTKPESKPKPNLLLIHGLGATAIWQW 68


>At5g13950.1 68418.m01631 expressed protein 
          Length = 939

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +1

Query: 109 TMKELGYIFDSNGQVRKIGADGQPTDEPFQFVVSNDHQECQAHYEELGSQSPIMFMIFFR 288
           +MK+ G    S    R  G       +P+   V  + ++  AH+  L    P  + I+ R
Sbjct: 325 SMKQSGKSIQSRALNRIFGNIDSLDVQPYGVFVEEEQKKLNAHWLHLVKDLPAAYAIWKR 384

Query: 289 LRL 297
           L+L
Sbjct: 385 LQL 387


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,246,623
Number of Sequences: 28952
Number of extensions: 180084
Number of successful extensions: 446
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)