Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0664
         (435 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q21751 Cluster: Putative sodium-dependent excitatory am...    35   0.86 
UniRef50_Q1A4I2 Cluster: FGF-3; n=1; Choristoneura occidentalis ...    33   2.0  
UniRef50_Q4SZR1 Cluster: Chromosome undetermined SCAF11541, whol...    32   4.6  
UniRef50_Q4SH16 Cluster: Chromosome 8 SCAF14587, whole genome sh...    32   6.0  
UniRef50_Q5X3B8 Cluster: Putative uncharacterized protein; n=1; ...    32   6.0  
UniRef50_Q8H0H1 Cluster: Putative uncharacterized protein A17; n...    32   6.0  
UniRef50_Q4RWB3 Cluster: Chromosome 2 SCAF14990, whole genome sh...    31   8.0  
UniRef50_A2TSI6 Cluster: Transporter, NRAMP family protein; n=4;...    31   8.0  
UniRef50_Q4XNT1 Cluster: Putative uncharacterized protein; n=1; ...    31   8.0  

>UniRef50_Q21751 Cluster: Putative sodium-dependent excitatory amino
           acid transporter glt-6; n=2; Caenorhabditis|Rep:
           Putative sodium-dependent excitatory amino acid
           transporter glt-6 - Caenorhabditis elegans
          Length = 558

 Score = 34.7 bits (76), Expect = 0.86
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +2

Query: 185 HS*FEVNLYVFSLTRLSNIIVFFKRYLSVFLTSLTSISSSPKTLDSVRLQRSDYVLTK*P 364
           H+   V L  F +TR  N +  FK  +   +T+  + S SPK +  + + ++DYV    P
Sbjct: 280 HTIITVPLMYFFITR-ENPLPIFKGMIQAAVTAFGTASGSPKNIRKLTITKNDYVGATLP 338

Query: 365 WHSEC 379
              +C
Sbjct: 339 MSMQC 343


>UniRef50_Q1A4I2 Cluster: FGF-3; n=1; Choristoneura occidentalis
           granulovirus|Rep: FGF-3 - Choristoneura occidentalis
           granulovirus
          Length = 299

 Score = 33.5 bits (73), Expect = 2.0
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -1

Query: 327 LTESKVFGDDDIEVNEVKKTDKYLLKKTIIFDSLVKENTYKLTSNQE 187
           L+  K+F D D +++ + +  KY  K   +++ +  EN Y  TSNQE
Sbjct: 57  LSTPKIFDDKDDDLDLIGEIYKYQQKNVQLYNVIDNENVYLDTSNQE 103


>UniRef50_Q4SZR1 Cluster: Chromosome undetermined SCAF11541, whole
           genome shotgun sequence; n=2; Tetraodontidae|Rep:
           Chromosome undetermined SCAF11541, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 444

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 123 CGVSGELFWSFNSLIRIHFNST-PDSKSICMY 215
           CGVSG ++  FN  + + F+S  P   S+C+Y
Sbjct: 202 CGVSGSVWVHFNHTVSVQFHSPWPGRNSLCLY 233


>UniRef50_Q4SH16 Cluster: Chromosome 8 SCAF14587, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 8
           SCAF14587, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 2317

 Score = 31.9 bits (69), Expect = 6.0
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 105 SRTVSGCGVSGELFWSFNSLIRIHFNSTPDSKSIC-MYF 218
           SRT + CGV   LF+ + S +RIH   TP   + C +YF
Sbjct: 5   SRTCNKCGVKFALFYQYVSHMRIHTGVTPYKCNGCGVYF 43


>UniRef50_Q5X3B8 Cluster: Putative uncharacterized protein; n=1;
           Legionella pneumophila str. Paris|Rep: Putative
           uncharacterized protein - Legionella pneumophila (strain
           Paris)
          Length = 287

 Score = 31.9 bits (69), Expect = 6.0
 Identities = 11/38 (28%), Positives = 27/38 (71%)
 Frame = -1

Query: 321 ESKVFGDDDIEVNEVKKTDKYLLKKTIIFDSLVKENTY 208
           +++VF  D+I+++E+KK    L+++ ++ + ++ E TY
Sbjct: 49  KAEVFPGDNIDISEIKKWITELIQQCLLIEYVINEKTY 86


>UniRef50_Q8H0H1 Cluster: Putative uncharacterized protein A17; n=1;
           Nicotiana tabacum|Rep: Putative uncharacterized protein
           A17 - Nicotiana tabacum (Common tobacco)
          Length = 573

 Score = 31.9 bits (69), Expect = 6.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 39  LSGFKVRNRSLYRDRSGMYANVSRTVSGCGVSGELFWSFNSLIRI 173
           +  FK    +L   RS  ++ V  T  GC ++  +FW FNS  R+
Sbjct: 381 MGDFKTGYLTLTSPRSMFFSQVIGTAMGCVITPLVFWIFNSAYRL 425


>UniRef50_Q4RWB3 Cluster: Chromosome 2 SCAF14990, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 2
           SCAF14990, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 868

 Score = 31.5 bits (68), Expect = 8.0
 Identities = 24/60 (40%), Positives = 31/60 (51%)
 Frame = +2

Query: 209 YVFSLTRLSNIIVFFKRYLSVFLTSLTSISSSPKTLDSVRLQRSDYVLTK*PWHSEC*SV 388
           Y  S +R S+ +   KRY      S  S  SSP T  S RL RSD +L++ P +S   SV
Sbjct: 107 YTISSSRPSDDVSDQKRYSYTSSNSSYSGVSSPTTTISTRLSRSDDILSE-PLYSRSSSV 165


>UniRef50_A2TSI6 Cluster: Transporter, NRAMP family protein; n=4;
           Flavobacteriaceae|Rep: Transporter, NRAMP family protein
           - Dokdonia donghaensis MED134
          Length = 411

 Score = 31.5 bits (68), Expect = 8.0
 Identities = 11/41 (26%), Positives = 27/41 (65%)
 Frame = +2

Query: 200 VNLYVFSLTRLSNIIVFFKRYLSVFLTSLTSISSSPKTLDS 322
           +N+Y  SL   + +++    + ++F T+LT++ +SP+ L++
Sbjct: 271 INMYTASLGDWATVLIGVAAFTTMFSTTLTTLDASPRALEA 311


>UniRef50_Q4XNT1 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 404

 Score = 31.5 bits (68), Expect = 8.0
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -1

Query: 309 FGDDDIEVNEVKKTDKYLLKKTIIFDSLVKENTYKLTSNQECY*NGSVLNY*NSRKVHPT 130
           FGD  ++V    K D     + II DS++ E+  K+  N +   N ++       K++P 
Sbjct: 13  FGDYLVQVKNKMKMDNDDSNEEIIIDSIISEHEKKVIENMKARFNYTIDFPLYLNKIYPD 72

Query: 129 LHNLTQC 109
           ++N T C
Sbjct: 73  IYN-TDC 78


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 368,055,046
Number of Sequences: 1657284
Number of extensions: 6276570
Number of successful extensions: 14888
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14885
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)