Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0664
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    25   3.8  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    25   5.0  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    25   6.7  

>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 27  VFRALSGFKVRNRSLYRDRSGMYA---NVSRTVSGCGVSGELFWSFNSLIRIHFNSTPD 194
           V R++SG  V +        G+Y+    +S  + G G S  +++S     +   N++PD
Sbjct: 53  VSRSVSGNIVNSVIKISSTEGVYSLWRGISSVIMGAGPSHAIYFSVLEFFKSKINASPD 111


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 233 SNIIVFFKRYLSVFLTSLTSISSSPKTLDSVRLQRSD 343
           SNI++    YL  + T     SSSP +L S+RL   D
Sbjct: 564 SNILIM--PYLKDYKTIENESSSSPLSLSSIRLALGD 598


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 82  RSRYNDLFRTLNPLKARNTSXASDS 8
           RSR   +FR ++P+K      A DS
Sbjct: 443 RSRLKQIFRLIDPVKTMQFQQAEDS 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,605,057
Number of Sequences: 5004
Number of extensions: 29345
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)