Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0664
         (435 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11517| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.31 
SB_55784| Best HMM Match : CUB (HMM E-Value=3.1e-25)                   27   6.7  
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 27   6.7  

>SB_11517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 330 SLTESKVFGDDDIEVNEVKKTDKYLLKKTII--FDSLVKENTYKLTSNQE 187
           ++ ESK     D++    K TDK +LK T+I   D LV++  +KL   +E
Sbjct: 49  AIAESKYQQQCDLKSEWEKATDKRILKNTVIRRVDRLVQKEKFKLEDRRE 98


>SB_55784| Best HMM Match : CUB (HMM E-Value=3.1e-25)
          Length = 418

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 108 RTVSGCGVSGELFWSFNS-LIRIHFNSTPDSKSICMYF 218
           R +   G + +L  SF++ L+  HF+ + DS S+C+ F
Sbjct: 3   RIIFQSGFNNKLTQSFSAKLVGPHFSRSVDSSSVCLRF 40


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 36  ALSGFKVRNRSLYRDRSGMYANVSRTVSGCGVSGE 140
           +L+GF    R +  D+S    N+S     CG+ G+
Sbjct: 265 SLAGFIEERRDIQFDQSAKLPNISSPAGRCGMEGD 299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,680,112
Number of Sequences: 59808
Number of extensions: 205110
Number of successful extensions: 425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)