Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0664
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-1|AAB00621.2|  558|Caenorhabditis elegans Glutamate trans...    35   0.029
AC006832-3|AAF39997.1|  176|Caenorhabditis elegans Hypothetical ...    28   3.4  
AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine re...    27   5.9  
AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical ...    27   7.8  

>U58746-1|AAB00621.2|  558|Caenorhabditis elegans Glutamate
           transporter family protein6 protein.
          Length = 558

 Score = 34.7 bits (76), Expect = 0.029
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +2

Query: 185 HS*FEVNLYVFSLTRLSNIIVFFKRYLSVFLTSLTSISSSPKTLDSVRLQRSDYVLTK*P 364
           H+   V L  F +TR  N +  FK  +   +T+  + S SPK +  + + ++DYV    P
Sbjct: 280 HTIITVPLMYFFITR-ENPLPIFKGMIQAAVTAFGTASGSPKNIRKLTITKNDYVGATLP 338

Query: 365 WHSEC 379
              +C
Sbjct: 339 MSMQC 343


>AC006832-3|AAF39997.1|  176|Caenorhabditis elegans Hypothetical
           protein ZK355.3 protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 294 IEVNEVKKTDKYLLKKTIIFDSLVKENTYK 205
           +++N++ +  KYL  KTI  D+L++ +  K
Sbjct: 33  VKLNQICQKQKYLRTKTIFIDNLIRSSLKK 62


>AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 58 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +3

Query: 51  KVRNRSLYRDRSGMYANVSRTVSGCGVSGELFWSFNSLIRIHFNSTPD 194
           K+ + SL     G   N      G   +G L WS  S +  +FN  PD
Sbjct: 221 KIESMSLTNGGIGKKLNKIAVTYGSIYTGILLWSIISALNANFNFLPD 268


>AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical
           protein Y54G9A.10 protein.
          Length = 365

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +1

Query: 142 FSGVLIV*YG----SILIALLIRSQFVCIFFN*TIEYNRFF*KIFVGFLDLINFNIVITE 309
           FSG L + Y     +I + + +   F C F N   + +RF+  + +  +D + FN+V+  
Sbjct: 133 FSGYLKLHYAISVSNIFLVIAVERSFACYFLNDYEKKSRFWIAVAIVLVDQM-FNLVVAY 191

Query: 310 NFRL 321
            F L
Sbjct: 192 LFFL 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,779,159
Number of Sequences: 27780
Number of extensions: 162433
Number of successful extensions: 369
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)