Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0664
         (435 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01770.1 68416.m00116 DNA-binding bromodomain-containing prot...    27   4.1  
At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)...    27   7.2  
At3g27350.1 68416.m03420 expressed protein                             27   7.2  
At4g39952.1 68417.m05658 pentatricopeptide (PPR) repeat-containi...    26   9.5  

>At3g01770.1 68416.m00116 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 620

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 306 GDDDIEVNEVKKTDKYLLKKTIIFDSLVKENTYKLTSNQEC 184
           GDD+IE++    +   L +   +FD  ++EN  K ++ + C
Sbjct: 317 GDDEIEIDINDLSHDALFQLRDLFDEFLRENQKKDSNGEPC 357


>At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)
           identical to PIR|T05180|T05180 S-receptor kinase ARK3
           precursor - [Arabidopsis thaliana]
          Length = 850

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 12  SDAXEVFRALSGFKVRNRSLYRDRSGMYANVSRTVSGCG 128
           S+   V   + GFK RN  ++  R G    V +T+  CG
Sbjct: 310 SNTSPVCNCIKGFKPRNPQVWGLRDGSDGCVRKTLLSCG 348


>At3g27350.1 68416.m03420 expressed protein
          Length = 274

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 321 ESKVFGDDDIEVNEVKKTDKYLLKKTIIFDSLVKENTYKLTSNQECY 181
           E+ +FG D ++  E KK ++ LLK+        K++   +T N+  +
Sbjct: 146 ENVMFGGDYVKEEEEKKVEEELLKEDWSVGEKEKQHRKSVTKNRPVF 192


>At4g39952.1 68417.m05658 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 726

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +3

Query: 153 FNSLIRIHFNSTPDSKSICMYF 218
           +NS+I+ HF++   ++S+C +F
Sbjct: 93  WNSIIKAHFSNGDYARSLCFFF 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,007,328
Number of Sequences: 28952
Number of extensions: 139555
Number of successful extensions: 340
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)