Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0663
         (395 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   5.9  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   5.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   5.9  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +1

Query: 55  DNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK 186
           DNI   +I  + K +     +  +  +K E   ++   FH++ K
Sbjct: 124 DNIVKPIIAFYYKPIKTLNGHEIKFIRKEEYISFESKVFHKLKK 167


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +2

Query: 287 LWCWLVIYG 313
           +WCW+V  G
Sbjct: 133 IWCWIVEIG 141


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 117 VLSCLRYSLSK*SNHNSTNIVITNLHVKAHLMSNFRSFG 1
           VL+C     +  S    +N ++ N H K H+M +    G
Sbjct: 547 VLTCKVCDQAFSSLKELSNHMVKNSHYKEHIMRSITESG 585


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,307
Number of Sequences: 336
Number of extensions: 1813
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)