Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0663
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...    94   6e-21
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    79   2e-16
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    73   1e-14
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans...    69   2e-13
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...    65   4e-12
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    60   9e-11
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    47   1e-06
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    38   6e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    32   0.028
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    27   1.1  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   2.4  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    25   5.6  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    24   7.4  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    24   9.8  

>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 94.3 bits (224), Expect = 6e-21
 Identities = 46/83 (55%), Positives = 55/83 (66%)
 Frame = +1

Query: 4   KGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVI 183
           +GPKVT  V FD++ GD+ +G + IGLFGKTVPKT ENF  LA   +G GY+GS FHRVI
Sbjct: 21  RGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVI 80

Query: 184 KNFMIQXXXXXXXXXXXXRSIYG 252
            NFMIQ            +SIYG
Sbjct: 81  PNFMIQGGDITKGDGTGGKSIYG 103



 Score = 81.0 bits (191), Expect = 6e-17
 Identities = 37/47 (78%), Positives = 38/47 (80%)
 Frame = +3

Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
           RF DENFKL H   G LSMANAG D+NGSQFFITTV TPWLDG HVV
Sbjct: 105 RFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVV 151


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 79.4 bits (187), Expect = 2e-16
 Identities = 36/47 (76%), Positives = 39/47 (82%)
 Frame = +3

Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
           +F DENF LKH   G LSMANAG +TNGSQFFITTV TPWLDG+HVV
Sbjct: 80  KFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVV 126



 Score = 59.7 bits (138), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 37/74 (50%)
 Frame = +1

Query: 34  FDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXX 213
           FD+      +G IV  LF   VPKT  NF  L    +G GY GS FHRVI  FM+Q    
Sbjct: 6   FDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGDF 65

Query: 214 XXXXXXXXRSIYGD 255
                   +SIYG+
Sbjct: 66  TRGNGTGGKSIYGE 79


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 73.3 bits (172), Expect = 1e-14
 Identities = 35/47 (74%), Positives = 39/47 (82%)
 Frame = +3

Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
           +FEDENF+LKH     LSMANAG +TNGSQFFITTV TP LDG+HVV
Sbjct: 85  KFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVV 131



 Score = 58.0 bits (134), Expect = 5e-10
 Identities = 36/81 (44%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
 Frame = +1

Query: 25  KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG----YKGSKFHRVIKNF 192
           K+S D KI      TI   LF   VPKT +NF  L    E +G    YKGS+FHRVIKNF
Sbjct: 8   KISIDGKIQP----TIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNF 63

Query: 193 MIQXXXXXXXXXXXXRSIYGD 255
           M+Q             SIYG+
Sbjct: 64  MLQGGDFTRGNGTGGESIYGE 84


>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 69.3 bits (162), Expect = 2e-13
 Identities = 33/46 (71%), Positives = 36/46 (78%)
 Frame = +3

Query: 258 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
           F DENF LKH   G LSMANAGKD+NG QFFITTV   +LDG+HVV
Sbjct: 91  FPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVV 136



 Score = 48.0 bits (109), Expect = 5e-07
 Identities = 31/66 (46%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
 Frame = +1

Query: 28  VSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLA--------QKPEGEGYKGSKFHRVI 183
           V  D+ I    +G I I LF   VPKT ENF Q          QKP G  YK S FHR+I
Sbjct: 7   VFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIG--YKNSTFHRII 64

Query: 184 KNFMIQ 201
           + FMIQ
Sbjct: 65  QGFMIQ 70


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 64.9 bits (151), Expect = 4e-12
 Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
 Frame = +3

Query: 255 RFEDE-NFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
           +F+DE +  L H GAG LSMANAG +TN SQFFIT   TPWLDG+H +
Sbjct: 71  KFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTI 118



 Score = 44.0 bits (99), Expect = 9e-06
 Identities = 28/66 (42%), Positives = 38/66 (57%)
 Frame = +1

Query: 58  NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 237
           ++G I+I L+ +  PKT +NF+ LA+  EG  Y G  FHRVI +F+IQ            
Sbjct: 9   SLGKILIELYTEHAPKTCQNFYTLAK--EGY-YDGVIFHRVIPDFVIQ-GGDPTGTGRGG 64

Query: 238 RSIYGD 255
            SIYGD
Sbjct: 65  TSIYGD 70


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 60.5 bits (140), Expect = 9e-11
 Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
 Frame = +3

Query: 246 IW*R-FEDE-NFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
           IW + FEDE +  LKH     +SMAN+G +TNGSQFFITT  TPWLDG+H +
Sbjct: 520 IWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTI 571



 Score = 37.9 bits (84), Expect = 6e-04
 Identities = 21/46 (45%), Positives = 26/46 (56%)
 Frame = +1

Query: 64  GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 201
           G I I L+ +  PK  +NF   A   E   Y  + FHR+IKNFMIQ
Sbjct: 464 GDISIKLYPEEAPKAVQNFTTHA---ENGYYDNTIFHRIIKNFMIQ 506


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 46.8 bits (106), Expect = 1e-06
 Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
 Frame = +3

Query: 240 QYIW*R-FEDENFK-LKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
           Q IW + F+DE    LKH   G +SMAN GK+TNGSQFFI       LD +H +
Sbjct: 339 QSIWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTI 392



 Score = 30.7 bits (66), Expect = 0.086
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +1

Query: 58  NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 201
           N G I I L     P    NF QLA++     Y+ + FHR I  FMIQ
Sbjct: 283 NHGEINIELHTDYAPHAVYNFVQLAKQGY---YRNTIFHRNIARFMIQ 327


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 37.9 bits (84), Expect = 6e-04
 Identities = 27/70 (38%), Positives = 34/70 (48%)
 Frame = +1

Query: 64  GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRS 243
           G I I L+ K VPK   NF QL    EG  Y G+  HRV+  F+IQ             S
Sbjct: 22  GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQ-GGDPTGTGMGGES 77

Query: 244 IYGDVLKMKT 273
           IYG+   ++T
Sbjct: 78  IYGEPFAVET 87



 Score = 27.1 bits (57), Expect = 1.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 276 KLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
           +L+    G + MA    + N SQFFIT   TP  +G+  +
Sbjct: 90  RLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQTL 129


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 32.3 bits (70), Expect = 0.028
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 52  DDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 201
           +  +G +VI LF K  PKT ENF +L +    + Y    F+ +  N+  Q
Sbjct: 6   ETTVGDLVIDLFVKEAPKTCENFLKLCKL---KYYNFCPFYNIQHNYTCQ 52


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 267  HLQNVTIYTAPSSSITLGKITTLDHEIFNY 178
            H +N   YT+ S+ ++  +I  LDH+I+NY
Sbjct: 999  HSENKIPYTSLSNHLST-EIVKLDHDIYNY 1027


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -3

Query: 240 APSSSITLGKITTLDHEIFNYSVELAPFVPLPLRFLS*LKEVLSCLRYSLS 88
           +PSS + L K+  LDH + + S    P  P    +++  K+  S L+ + S
Sbjct: 186 SPSSLVPLLKLPALDHAVSSSSSSDLPSDPNSASYIASSKQKASSLKLTSS 236


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 73  VIGLFGKTVPKTTENFFQLAQKP 141
           ++ +F KT P T E FF + ++P
Sbjct: 302 LVVIFQKTDPSTKEKFFLIRKRP 324


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -1

Query: 179 TLWNLLPLYPSPSGF*AS*KKFSVVLGTVF-PNNPITIVPILSSP 48
           T +  LP  P  S    +   F   L   F PNNP+   P L+SP
Sbjct: 99  TTYRQLPNEPQNSAAYTTYSSFPNALFDDFSPNNPLDTDPFLTSP 143


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 4   KGPKVTHKVSFDMKIGDDNIGTIVI 78
           +GP+     SFD+ +G+D   +I I
Sbjct: 195 RGPQARRNTSFDVFVGEDIEASITI 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,530,986
Number of Sequences: 5004
Number of extensions: 29194
Number of successful extensions: 90
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)