Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0663
         (395 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   6e-22
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   6e-17
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)               79   2e-15
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   5e-14
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   1e-09
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         59   1e-09
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         59   1e-09
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         55   2e-08
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          52   1e-07
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         42   2e-04
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.007
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         35   0.028
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.036
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            32   0.19 

>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score =   99 bits (238), Expect = 6e-22
 Identities = 43/47 (91%), Positives = 45/47 (95%)
 Frame = +3

Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
           +F DENFKL+HYGAGWLSMANAGKDTNGSQFFITTV TPWLDGRHVV
Sbjct: 123 KFADENFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVV 169



 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 45/138 (32%), Positives = 58/138 (42%), Gaps = 18/138 (13%)
 Frame = +1

Query: 4   KGPKVTHKVSFDMKIGDDNIGTIVIGLFG-------------KTVPKTTENFFQL----- 129
           K P VT KV FD+ IG +  G I IGLF              +++  T   +F       
Sbjct: 21  KDPIVTKKVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIGTNFRYFDTYYCCT 80

Query: 130 AQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGDVLKMKTSS*STMVLVGYL 309
            +  +G GYK S FHRVI++FMIQ            +SIYG     +      +   G  
Sbjct: 81  IESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADENFK---LQHYGAG 137

Query: 310 WLMQAKTQMDLNFSSQLF 363
           WL  A    D N  SQ F
Sbjct: 138 WLSMANAGKDTN-GSQFF 154


>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 83.4 bits (197), Expect = 6e-17
 Identities = 34/44 (77%), Positives = 38/44 (86%)
 Frame = +3

Query: 258 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRH 389
           F+DENF LKHYG GWL MANAGK+TNGSQF+ITT+ T WLDG H
Sbjct: 105 FDDENFNLKHYGPGWLCMANAGKNTNGSQFYITTIKTSWLDGSH 148



 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 41/79 (51%), Positives = 46/79 (58%)
 Frame = +1

Query: 16  VTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFM 195
           VT KV  D+ IG    G +++GLFG T PKT  NF  LA K +G GYK S FHRVIKNFM
Sbjct: 24  VTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQGFGYKDSIFHRVIKNFM 83

Query: 196 IQXXXXXXXXXXXXRSIYG 252
           IQ             SIYG
Sbjct: 84  IQGGDFTNKDGTGGYSIYG 102


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 35/47 (74%), Positives = 40/47 (85%)
 Frame = +3

Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
           +FEDENF LKH GAG LSMAN+G +TNGSQFF+TT  T WLDG+HVV
Sbjct: 215 KFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTDWLDGKHVV 261



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 34/80 (42%), Positives = 43/80 (53%)
 Frame = +1

Query: 13  KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNF 192
           +V  +V FD+ IG+ + G IV+ L    VP T ENF  L    +G GYKGS FHR+I  F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQF 193

Query: 193 MIQXXXXXXXXXXXXRSIYG 252
           M Q            +SIYG
Sbjct: 194 MCQGGDFTKHNGTGGKSIYG 213


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 73.7 bits (173), Expect = 5e-14
 Identities = 33/47 (70%), Positives = 36/47 (76%)
 Frame = +3

Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
           +F DENF LKH G G LSMANAG  TNGSQFF+ T  T WLDG+HVV
Sbjct: 81  KFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKTSWLDGKHVV 127



 Score = 64.9 bits (151), Expect = 2e-11
 Identities = 37/81 (45%), Positives = 43/81 (53%)
 Frame = +1

Query: 10  PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKN 189
           PK T+   FD++IG    G IV+ L    VPKT ENF  L    +G GYKGS FHRVI  
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPG 58

Query: 190 FMIQXXXXXXXXXXXXRSIYG 252
           FM Q            +SIYG
Sbjct: 59  FMCQGGDFTRGDGTGGKSIYG 79


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 26/29 (89%), Positives = 27/29 (93%)
 Frame = +3

Query: 309 MANAGKDTNGSQFFITTV*TPWLDGRHVV 395
           MANAGKDTNGSQFFITTV T WLDG+HVV
Sbjct: 1   MANAGKDTNGSQFFITTVKTSWLDGKHVV 29


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 29/47 (61%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
 Frame = +3

Query: 258 FEDENFK-LKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
           FEDE  + L+H     +SMANAG +TNGSQFFIT V TPWLD +H V
Sbjct: 14  FEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTV 60


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 28/38 (73%), Positives = 31/38 (81%)
 Frame = +3

Query: 282 KHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
           +H   G LSMAN+G +TNGSQFFITTV TP LDGRHVV
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVV 225


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 23/45 (51%), Positives = 31/45 (68%)
 Frame = +3

Query: 258 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHV 392
           FEDE+F + H   G + MAN G+ TNGSQF+IT    PW+D ++V
Sbjct: 57  FEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYV 101


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = +3

Query: 303 LSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
           LSMANAG  TNGSQFF+ T  T WLDG+HVV
Sbjct: 3   LSMANAGPGTNGSQFFLCTAKTSWLDGKHVV 33


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 21/35 (60%), Positives = 23/35 (65%)
 Frame = +3

Query: 258 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV 362
           F DE F+ KH     LSMAN G +TNGSQFFI  V
Sbjct: 37  FGDECFEFKHERPMLLSMANRGPNTNGSQFFIIHV 71


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 249 W*RFEDENFKL----KHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
           W   +DE   L     H   G +SMAN G ++NGSQFFI     P LD ++ +
Sbjct: 285 WEELDDEALDLMGRCNHNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTM 337


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 34.7 bits (76), Expect = 0.028
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +1

Query: 58  NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK 186
           ++G I I L+GK  PK   NF QL    EG  Y  + FHR++K
Sbjct: 11  SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIVK 50


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 34.3 bits (75), Expect = 0.036
 Identities = 21/48 (43%), Positives = 27/48 (56%)
 Frame = +1

Query: 58  NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 201
           ++G I I L     P +T NF  LA    G  Y G++FHRVI  FM+Q
Sbjct: 31  SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQ 75


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = +1

Query: 64  GTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHR 177
           G ++  LF   VPKT ENF  L    +G G        YKG  FHR
Sbjct: 2   GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,246,294
Number of Sequences: 59808
Number of extensions: 206940
Number of successful extensions: 304
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)