Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0663
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   6.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   9.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   9.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   9.0  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 310 IDNQPAP*CFSLKFSSSK 257
           + NQ +  CFSLKF + K
Sbjct: 537 LGNQNSEMCFSLKFKNKK 554


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 163 SLCTPPPQVSELVER 119
           S  TPPPQV E+ ++
Sbjct: 685 SATTPPPQVDEVDDK 699


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 270 FHLQNVTIYTAPSSSITLGKITTLDHEIFNYSV 172
           FHL+     T  S  +T     T  HEI  YS+
Sbjct: 175 FHLETHPNVTWYSQCVTFNAFPTYTHEI-TYSL 206


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +1

Query: 1   PKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENF 120
           P   K   +   ++ I  D    I + + G  VP+  E+F
Sbjct: 159 PNDEKSLFENGVEIGINFDKYDNIQVNVSGDNVPQPIESF 198


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -3

Query: 264 LQNVTIYTAPSSSITLGKITTLDHEIFNYSVELAPFVPLPL 142
           ++N+     P S++ +  +T  D+E   Y   L   + LP+
Sbjct: 83  VENLQANEKPWSTLPIEDLTKSDNEDITYPTVLEVQLNLPI 123


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -3

Query: 264 LQNVTIYTAPSSSITLGKITTLDHEIFNYSVELAPFVPLPL 142
           ++N+     P S++ +  +T  D+E   Y   L   + LP+
Sbjct: 121 VENLQANEKPWSTLPIEDLTKSDNEDITYPTVLEVQLNLPI 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,030
Number of Sequences: 438
Number of extensions: 2193
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)