Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0663
(395 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase, pu... 87 4e-18
At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase / c... 84 3e-17
At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase, ch... 83 5e-17
At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase, pu... 81 2e-16
At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase cyc... 80 5e-16
At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase, pu... 78 2e-15
At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase / c... 77 3e-15
At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase / c... 77 3e-15
At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase / c... 72 1e-13
At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase, cy... 72 2e-13
At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase / c... 71 4e-13
At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase, pu... 70 6e-13
At2g38730.1 68415.m04756 peptidyl-prolyl cis-trans isomerase, pu... 68 3e-12
At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase cyc... 66 6e-12
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 66 8e-12
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 66 8e-12
At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase, pu... 65 1e-11
At1g01940.1 68414.m00112 peptidyl-prolyl cis-trans isomerase cyc... 50 7e-07
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyc... 46 9e-06
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 44 5e-05
At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase, pu... 40 6e-04
At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase cyc... 39 0.001
At3g66654.3 68416.m00779 peptidyl-prolyl cis-trans isomerase cyc... 38 0.002
At3g66654.2 68416.m00778 peptidyl-prolyl cis-trans isomerase cyc... 38 0.002
At3g66654.1 68416.m00777 peptidyl-prolyl cis-trans isomerase cyc... 38 0.002
At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase cyc... 37 0.006
At2g47320.1 68415.m05907 peptidyl-prolyl cis-trans isomerase cyc... 36 0.007
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 36 0.007
At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase cyc... 30 0.49
At3g22870.1 68416.m02883 F-box family protein contains Pfam PF00... 26 7.9
>At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
(ROC7) similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 204
Score = 87.0 bits (206), Expect = 4e-18
Identities = 39/47 (82%), Positives = 42/47 (89%)
Frame = +3
Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
+F DENFKLKH G G+LSMANAG+DTNGSQFFITTV T WLDGRHVV
Sbjct: 120 KFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVV 166
Score = 76.6 bits (180), Expect = 6e-15
Identities = 41/88 (46%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Frame = +1
Query: 13 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKF 171
++THKV FD++I G IV+GLFGKTVPKT ENF L +G G YKGS F
Sbjct: 32 EITHKVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSF 91
Query: 172 HRVIKNFMIQXXXXXXXXXXXXRSIYGD 255
HR+I +FM+Q SIYG+
Sbjct: 92 HRIIPSFMLQGGDFTHGNGMGGESIYGE 119
>At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP5) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443755|gb|AAB71401
Length = 201
Score = 84.2 bits (199), Expect = 3e-17
Identities = 38/47 (80%), Positives = 41/47 (87%)
Frame = +3
Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
+F DENFKLKH G G LSMAN+G+DTNGSQFFITTV T WLDGRHVV
Sbjct: 117 KFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVV 163
Score = 79.4 bits (187), Expect = 8e-16
Identities = 43/87 (49%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Frame = +1
Query: 13 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKF 171
+VTHKV FD++I + G +VIGLFGK VPKT ENF L +G G YKGSKF
Sbjct: 29 EVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKF 88
Query: 172 HRVIKNFMIQXXXXXXXXXXXXRSIYG 252
HR+I +FMIQ SIYG
Sbjct: 89 HRIIPSFMIQGGDFTHGNGMGGESIYG 115
>At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase,
chloroplast / cyclophilin / rotamase / cyclosporin
A-binding protein (ROC4) identical to peptidyl-prolyl
cis-trans isomerase, chloroplast precursor, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34791; identical to
cDNA nuclear-encoded chloroplast stromal cyclophilin
(ROC4) GI:405130
Length = 260
Score = 83.4 bits (197), Expect = 5e-17
Identities = 42/80 (52%), Positives = 51/80 (63%)
Frame = +1
Query: 13 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNF 192
KVT+KV FD++IG + G IV+GLFG+ VPKT ENF L + GYKGS FHR+IK+F
Sbjct: 92 KVTNKVYFDVEIGGEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYGYKGSSFHRIIKDF 151
Query: 193 MIQXXXXXXXXXXXXRSIYG 252
MIQ SIYG
Sbjct: 152 MIQGGDFTEGNGTGGISIYG 171
Score = 76.6 bits (180), Expect = 6e-15
Identities = 35/47 (74%), Positives = 38/47 (80%)
Frame = +3
Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
+FEDENF LKH G G LSMANAG +TNGSQFFI TV T WLD +HVV
Sbjct: 173 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVV 219
>At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 228
Score = 81.4 bits (192), Expect = 2e-16
Identities = 36/47 (76%), Positives = 40/47 (85%)
Frame = +3
Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
+F DENFKLKH G G+LSMAN+G D+NGSQFFITTV T WLDG HVV
Sbjct: 144 KFADENFKLKHTGPGFLSMANSGPDSNGSQFFITTVTTSWLDGHHVV 190
Score = 74.1 bits (174), Expect = 3e-14
Identities = 41/87 (47%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Frame = +1
Query: 16 VTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFH 174
VTHKV FD++I G I+IGLFG VPKT ENF L +G G +KGS FH
Sbjct: 57 VTHKVYFDIQINGSPAGRILIGLFGNIVPKTAENFRSLCTGEKGVGNMGKPLYFKGSSFH 116
Query: 175 RVIKNFMIQXXXXXXXXXXXXRSIYGD 255
R+I FMIQ SIYGD
Sbjct: 117 RIIPGFMIQGGDFTRGDGRGGESIYGD 143
>At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 259
Score = 80.2 bits (189), Expect = 5e-16
Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Frame = +1
Query: 13 KVTHKVSFDMKIGDDN---IGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVI 183
K+THKV FD+ +G+ G IVIGL+G VP+T ENF L +G GYKGS FHRVI
Sbjct: 87 KITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFHRVI 146
Query: 184 KNFMIQXXXXXXXXXXXXRSIYGDVLK 264
++FMIQ +S+YG K
Sbjct: 147 RDFMIQGGDFEKGNGTGGKSVYGRTFK 173
Score = 78.2 bits (184), Expect = 2e-15
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +3
Query: 258 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
F+DENFKL H G G LSMANAG +TNGSQFFI T+ T WLDGRHVV
Sbjct: 172 FKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVV 217
>At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Catharanthus roseus] SWISS-PROT:Q39613
Length = 176
Score = 77.8 bits (183), Expect = 2e-15
Identities = 35/47 (74%), Positives = 39/47 (82%)
Frame = +3
Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
+FEDENFKLKH G G LSMAN+G +TNGSQFFI T T WLDG+HVV
Sbjct: 89 KFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVV 135
Score = 52.8 bits (121), Expect = 8e-08
Identities = 32/83 (38%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Frame = +1
Query: 25 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 183
KV FD+ IG G +V+ LF P+T NF L G G YKGS FHR+I
Sbjct: 5 KVFFDILIGKMKAGRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAFHRII 64
Query: 184 KNFMIQXXXXXXXXXXXXRSIYG 252
FM Q SIYG
Sbjct: 65 PGFMCQGGDFTRGNGTGGESIYG 87
>At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase /
cyclophilin / rotamase / cyclosporin A-binding protein
(ROC1) identical to SP|P34790 Peptidyl-prolyl cis-trans
isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin)
(Cyclosporin A-binding protein) {Arabidopsis thaliana}
Length = 172
Score = 77.4 bits (182), Expect = 3e-15
Identities = 35/47 (74%), Positives = 39/47 (82%)
Frame = +3
Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
+FEDENF+ KH G G LSMANAG +TNGSQFFI TV T WLDG+HVV
Sbjct: 89 KFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVV 135
Score = 56.8 bits (131), Expect = 5e-09
Identities = 35/83 (42%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Frame = +1
Query: 25 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 183
KV FDM I G IV+ L+ P+T ENF L +G G +KGSKFHRVI
Sbjct: 5 KVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVI 64
Query: 184 KNFMIQXXXXXXXXXXXXRSIYG 252
NFM Q SIYG
Sbjct: 65 PNFMCQGGDFTAGNGTGGESIYG 87
>At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP2) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443757|gb|AAB71402; similar
to peptidyl-prolyl cis-trans isomerase, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34790
Length = 174
Score = 77.4 bits (182), Expect = 3e-15
Identities = 35/47 (74%), Positives = 39/47 (82%)
Frame = +3
Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
+FEDENF+ KH G G LSMANAG +TNGSQFFI TV T WLDG+HVV
Sbjct: 90 KFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVV 136
Score = 58.0 bits (134), Expect = 2e-09
Identities = 36/83 (43%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Frame = +1
Query: 25 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 183
KV FDM IG G IV+ L+ PKT ENF L +G G +KGS FHRVI
Sbjct: 6 KVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVI 65
Query: 184 KNFMIQXXXXXXXXXXXXRSIYG 252
NFM Q SIYG
Sbjct: 66 PNFMCQGGDFTKGNGTGGESIYG 88
>At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP1) / rotamase identical to cyclophilin
(CYP1) gi|992643|gb|AAA75512; similar to peptidyl-prolyl
cis-trans isomerase, PPIase (cyclophilin, cyclosporin
A-binding protein) [Catharanthus roseus]
SWISS-PROT:Q39613
Length = 172
Score = 72.1 bits (169), Expect = 1e-13
Identities = 33/47 (70%), Positives = 38/47 (80%)
Frame = +3
Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
+F+DENF KH GAG LSMAN+G +TNGSQFFI T T WLDG+HVV
Sbjct: 89 KFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVV 135
Score = 53.2 bits (122), Expect = 6e-08
Identities = 34/87 (39%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +1
Query: 25 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 183
+V FDM + IG I + LF T P T ENF L +G G +KGS FHRVI
Sbjct: 5 RVFFDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVI 64
Query: 184 KNFMIQXXXXXXXXXXXXRSIYGDVLK 264
FM Q SIYG K
Sbjct: 65 PGFMCQGGDFTAKNGTGGESIYGAKFK 91
>At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase,
cytosolic / cyclophilin / rotamase (ROC3) identical to
cytosolic cyclophilin [Arabidopsis thaliana] GI:1305455
Length = 173
Score = 71.7 bits (168), Expect = 2e-13
Identities = 33/47 (70%), Positives = 37/47 (78%)
Frame = +3
Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
+F+DENF KH G G LSMANAG +TNGSQFFI T T WLDG+HVV
Sbjct: 90 KFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVV 136
Score = 60.5 bits (140), Expect = 4e-10
Identities = 36/87 (41%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = +1
Query: 25 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 183
KV FDM +G + G IV+ L+ T P+T ENF L G G YKGS FHRVI
Sbjct: 6 KVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVI 65
Query: 184 KNFMIQXXXXXXXXXXXXRSIYGDVLK 264
FM Q SIYG K
Sbjct: 66 PKFMCQGGDFTAGNGTGGESIYGSKFK 92
>At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase /
cyclophilin-40 (CYP40) / rotamase identical to
cyclophilin-40 [Arabidopsis thaliana] GI:13442983;
supporting cDNA gi|13442982|gb|AY026065.1|
Length = 361
Score = 70.5 bits (165), Expect = 4e-13
Identities = 32/47 (68%), Positives = 38/47 (80%)
Frame = +3
Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
+F+DENF+LKH G LSMAN+G +TNGSQFFITT T LDG+HVV
Sbjct: 90 KFDDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVV 136
Score = 58.0 bits (134), Expect = 2e-09
Identities = 36/84 (42%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Frame = +1
Query: 25 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHRV 180
K D+ IG + G IVI L+ VPKT ENF L +G G YKG++FHRV
Sbjct: 5 KCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRV 64
Query: 181 IKNFMIQXXXXXXXXXXXXRSIYG 252
IK FMIQ SIYG
Sbjct: 65 IKGFMIQGGDISANDGTGGESIYG 88
>At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 224
Score = 69.7 bits (163), Expect = 6e-13
Identities = 30/46 (65%), Positives = 36/46 (78%)
Frame = +3
Query: 258 FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
F DENFK++H AG ++MAN G D+NGSQFFITTV WL+G HVV
Sbjct: 133 FPDENFKIQHSHAGMVAMANTGPDSNGSQFFITTVKASWLEGEHVV 178
Score = 61.7 bits (143), Expect = 2e-10
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Frame = +1
Query: 13 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGE-------GYKGSKF 171
++T++V D+ I +G IVIGL+G VPKT ENF L +G+ YKG+ F
Sbjct: 44 EITNRVFLDVDIDGQRLGRIVIGLYGTVVPKTVENFRALCTGEKGKTSSGKPLHYKGTPF 103
Query: 172 HRVIKNFMIQXXXXXXXXXXXXRSIYG 252
HR+I F+IQ SIYG
Sbjct: 104 HRIISGFVIQGGDIIHGDGKSSDSIYG 130
>At2g38730.1 68415.m04756 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Homo sapiens]
gi|3647230|gb|AAC60793
Length = 199
Score = 67.7 bits (158), Expect = 3e-12
Identities = 30/47 (63%), Positives = 34/47 (72%)
Frame = +3
Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
+FEDENF KH G G LSMAN+G +TNG QFFIT WLD +HVV
Sbjct: 115 KFEDENFTAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVV 161
Score = 54.4 bits (125), Expect = 3e-08
Identities = 36/89 (40%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = +1
Query: 1 PKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQ---KPEGE--GYKGS 165
P PK V FD+ IG G I + LF PKT ENF Q + G+ GYK
Sbjct: 26 PPNPK-NPVVFFDVSIGGIPAGRIKMELFADIAPKTAENFRQFCTGELRKAGKPLGYKEC 84
Query: 166 KFHRVIKNFMIQXXXXXXXXXXXXRSIYG 252
+FHRVIK+FM+Q SIYG
Sbjct: 85 QFHRVIKDFMVQSGDFLKNDGSGCMSIYG 113
>At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to SP|P87051
Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8)
(Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains
Pfam profiles PF00160: peptidyl-prolyl cis-trans
isomerase cyclophilin-type, PF00400: WD domain G-beta
repeat
Length = 631
Score = 66.5 bits (155), Expect = 6e-12
Identities = 36/54 (66%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Frame = +3
Query: 240 QYIW*R-FEDENFK-LKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
Q IW R FEDE K L+H LSMANAG +TNGSQFFITTV TPWLD +H V
Sbjct: 539 QSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTV 592
Score = 33.5 bits (73), Expect = 0.052
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +1
Query: 61 IGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 201
+G I + L+ + PKT ENF + Y FHRVI+ FMIQ
Sbjct: 484 LGDIHMKLYPEECPKTVENFTTHCRNGY---YDNHLFHRVIRGFMIQ 527
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 66.1 bits (154), Expect = 8e-12
Identities = 31/47 (65%), Positives = 35/47 (74%)
Frame = +3
Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
+F DENF+L H GAG LSMAN G +TNGSQFFI P LDG+HVV
Sbjct: 93 KFSDENFRLDHDGAGVLSMANCGPNTNGSQFFILFKRQPHLDGKHVV 139
Score = 58.0 bits (134), Expect = 2e-09
Identities = 37/88 (42%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Frame = +1
Query: 13 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSK 168
K V D+ IG D + IVI LF VPKT ENF L G G +KGS
Sbjct: 4 KKNPNVFLDVSIGGDPVQRIVIELFADVVPKTAENFRALCTGEAGVGKSTGKPLHFKGSS 63
Query: 169 FHRVIKNFMIQXXXXXXXXXXXXRSIYG 252
FHRVIK FM Q SIYG
Sbjct: 64 FHRVIKGFMAQGGDFSNGNGTGGESIYG 91
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 66.1 bits (154), Expect = 8e-12
Identities = 31/47 (65%), Positives = 35/47 (74%)
Frame = +3
Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
+F DENF+L H GAG LSMAN G +TNGSQFFI P LDG+HVV
Sbjct: 93 KFSDENFRLDHDGAGVLSMANCGPNTNGSQFFILFKRQPHLDGKHVV 139
Score = 58.0 bits (134), Expect = 2e-09
Identities = 37/88 (42%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Frame = +1
Query: 13 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSK 168
K V D+ IG D + IVI LF VPKT ENF L G G +KGS
Sbjct: 4 KKNPNVFLDVSIGGDPVQRIVIELFADVVPKTAENFRALCTGEAGVGKSTGKPLHFKGSS 63
Query: 169 FHRVIKNFMIQXXXXXXXXXXXXRSIYG 252
FHRVIK FM Q SIYG
Sbjct: 64 FHRVIKGFMAQGGDFSNGNGTGGESIYG 91
>At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
contains Pfam domain, PF00160: peptidyl-prolyl cis-trans
isomerase, cyclophilin-type
Length = 164
Score = 65.3 bits (152), Expect = 1e-11
Identities = 32/48 (66%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Frame = +3
Query: 255 RFEDE-NFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
+FEDE N +LKH GAG LSMANAG +TNGSQFFIT P LDG+H +
Sbjct: 79 KFEDEINKELKHTGAGILSMANAGPNTNGSQFFITLAPQPSLDGKHTI 126
Score = 34.7 bits (76), Expect = 0.023
Identities = 14/50 (28%), Positives = 30/50 (60%)
Frame = +1
Query: 52 DDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 201
+ ++G + ++ K P+T NF +L+++ Y FHR++K+F++Q
Sbjct: 15 ETSMGPFTVEMYYKHSPRTCRNFLELSRRGY---YDNVLFHRIVKDFIVQ 61
>At1g01940.1 68414.m00112 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 160
Score = 49.6 bits (113), Expect = 7e-07
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +3
Query: 255 RFEDE-NFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
+F DE LKH G LSMAN+G +TNGSQFFIT P L+G + +
Sbjct: 70 KFNDEIRDSLKHNARGMLSMANSGPNTNGSQFFITYAKQPHLNGLYTI 117
Score = 39.1 bits (87), Expect = 0.001
Identities = 22/48 (45%), Positives = 26/48 (54%)
Frame = +1
Query: 58 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 201
N+G I +F VPK+ ENF L Y G+ FHR IK FMIQ
Sbjct: 8 NLGDIKCEIFCDEVPKSAENFLALCASGY---YDGTIFHRNIKGFMIQ 52
>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 595
Score = 46.0 bits (104), Expect = 9e-06
Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +3
Query: 246 IW*R-FEDE-NFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
IW + F+DE N KL H G G +SMAN+G TNGSQFF+ L+ +H V
Sbjct: 409 IWGKPFKDEPNSKLLHSGRGVVSMANSGPHTNGSQFFVLYKSATHLNYKHTV 460
Score = 37.1 bits (82), Expect = 0.004
Identities = 26/66 (39%), Positives = 30/66 (45%)
Frame = +1
Query: 4 KGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVI 183
K PK V F GD NI L P+ ENF L ++ Y G FHR I
Sbjct: 338 KNPKKKGYVQFQTTHGDLNIE-----LHCDIAPRACENFITLCERGY---YNGVAFHRSI 389
Query: 184 KNFMIQ 201
+NFMIQ
Sbjct: 390 RNFMIQ 395
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 43.6 bits (98), Expect = 5e-05
Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Frame = +1
Query: 13 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSK 168
K +V D+ I D T+V LF + PKT+ENF L +G G YKGS
Sbjct: 4 KKNPQVFMDVSIDGDPAETMVFELFPEVAPKTSENFRALCTGEKGIGPRSGKPLHYKGSF 63
Query: 169 FHRVIKNFMIQXXXXXXXXXXXXRSIY 249
FHR++K Q SIY
Sbjct: 64 FHRIMKGSSAQAGDFVNRNGTAGESIY 90
Score = 36.7 bits (81), Expect = 0.006
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +3
Query: 255 RFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV*TPWLDGRHVV 395
+F DE+ KL+H G LSM+ A +D GS F IT LD +VV
Sbjct: 93 KFPDESPKLRHEETGLLSMSIADRDKFGSHFHITFRPNQQLDRNNVV 139
>At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase PPIase
(cyclophilin, cyclosporin A-binding protein) [Tomato]
SWISS-PROT:P21568
Length = 232
Score = 39.9 bits (89), Expect = 6e-04
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +1
Query: 25 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 183
KV FD+ + G IVI LF P+T ENF L G G YKGS F ++
Sbjct: 5 KVFFDLTVDGKPAGRIVIELFADLTPRTAENFRGLCTGERGIGKCGKPIHYKGSTFDHIV 64
Query: 184 KNFM 195
+ M
Sbjct: 65 PDLM 68
>At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 317
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 19 THKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFM 195
T K D+ I + IG I+IGL+G VP T F + G Y+ F +++ ++
Sbjct: 91 TKKAFIDVSIDGEPIGRIIIGLYGDDVPAGTARFSSIVSGKAGITYRRKDFVKIMPGYV 149
>At3g66654.3 68416.m00779 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 64 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 201
G I + LF + P+ + F L QK + +KG F RVIKN+++Q
Sbjct: 90 GLITVELFKEGSPEVVDKFLDLCQK---DHFKGMPFQRVIKNYLVQ 132
>At3g66654.2 68416.m00778 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 64 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 201
G I + LF + P+ + F L QK + +KG F RVIKN+++Q
Sbjct: 90 GLITVELFKEGSPEVVDKFLDLCQK---DHFKGMPFQRVIKNYLVQ 132
>At3g66654.1 68416.m00777 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 64 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 201
G I + LF + P+ + F L QK + +KG F RVIKN+++Q
Sbjct: 90 GLITVELFKEGSPEVVDKFLDLCQK---DHFKGMPFQRVIKNYLVQ 132
>At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 504
Score = 36.7 bits (81), Expect = 0.006
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 258 FEDE-NFKLKHYGAGWLSMANAGK-DTNGSQFFITTV*TPWLDGRHVV 395
F DE + +L+ G ++MANA ++NGSQFF T WLD +H +
Sbjct: 83 FADEFHSRLRFSHRGIVAMANASSPNSNGSQFFFTLDKCDWLDKKHTI 130
Score = 34.3 bits (75), Expect = 0.030
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 64 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGY-KGSKFHRVIKNFMIQXXXXXXXXXXXXR 240
G I + L+ K PK+ NF QL EGY + FHRVI F++Q
Sbjct: 22 GPIDVELWPKEAPKSVRNFVQLCL----EGYFDNTIFHRVIPGFLVQGGDPTGSGTGGD- 76
Query: 241 SIYGDV 258
SIYG V
Sbjct: 77 SIYGGV 82
>At2g47320.1 68415.m05907 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 230
Score = 36.3 bits (80), Expect = 0.007
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 52 DDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGY-KGSKFHRVIKNFMIQ 201
D G++ I LF T P + F + Q +GY KG F RV+K+F+IQ
Sbjct: 83 DTGKGSVTIELFKDTAPNVVDQFMKFCQ----DGYFKGFLFSRVVKHFVIQ 129
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 36.3 bits (80), Expect = 0.007
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +3
Query: 258 FEDE-NFKLKHYGAGWLSMANAGKDTNGSQFFIT-TV*TPWLDGRHVV 395
++DE + LKH G ++MA+ G++ N SQF+ T +LDG+H V
Sbjct: 78 YKDEIHLDLKHSKTGTVAMASGGENLNASQFYFTLRDDLDYLDGKHTV 125
Score = 30.7 bits (66), Expect = 0.37
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 58 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 201
++G IVI L P T +NF +L + + Y G FH V K+F Q
Sbjct: 8 SLGDIVIDLHSDKCPLTCKNFLKLCKI---KYYNGCLFHTVQKDFTAQ 52
>At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 290
Score = 30.3 bits (65), Expect = 0.49
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 61 IGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRV 180
+G +V+GL+G+ VP T F ++ YK + H++
Sbjct: 85 LGRVVLGLYGRHVPITVSTFKRMCTS-SSTSYKNTPVHKI 123
>At3g22870.1 68416.m02883 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 413
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 201 LDHEI-FNYSVE-LAPFVPLPLRFLS*LKEVLSCLR 100
+DH I F+++ E P VPLP R + LSC+R
Sbjct: 226 VDHIICFDFTSERFGPLVPLPFRAMKESLVTLSCVR 261
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,075,812
Number of Sequences: 28952
Number of extensions: 156658
Number of successful extensions: 413
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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