SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0662
         (307 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9V3G1 Cluster: 60S ribosomal protein L8; n=71; Eukaryo...   156   1e-37
UniRef50_P62917 Cluster: 60S ribosomal protein L8; n=122; cellul...   139   1e-32
UniRef50_Q06B43 Cluster: Ribosomal protein; n=7; Coelomata|Rep: ...   134   3e-31
UniRef50_Q41960 Cluster: 60S ribosomal protein KD4/L2; n=3; Euka...   119   1e-26
UniRef50_Q5BZD1 Cluster: SJCHGC07017 protein; n=1; Schistosoma j...   107   5e-23
UniRef50_Q3T1K8 Cluster: Rpl8 protein; n=8; Coelomata|Rep: Rpl8 ...    79   1e-14
UniRef50_O15574 Cluster: 60S ribosomal protein L8; n=1; Entamoeb...    53   1e-06
UniRef50_Q8TY93 Cluster: 50S ribosomal protein L2P; n=17; Euryar...    48   5e-05
UniRef50_A7R935 Cluster: Chromosome undetermined scaffold_3264, ...    43   0.002
UniRef50_Q975I4 Cluster: 50S ribosomal protein L2P; n=10; Archae...    42   0.003
UniRef50_Q3LWH0 Cluster: Ribosomal protein L8; n=1; Bigelowiella...    42   0.004
UniRef50_Q8ZYF5 Cluster: 50S ribosomal protein L2P; n=6; Thermop...    39   0.019
UniRef50_Q9YFN1 Cluster: 50S ribosomal protein L2P; n=3; Archaea...    37   0.10 
UniRef50_Q9AIG2 Cluster: Ribosomal protein L2; n=4; Bacteria|Rep...    35   0.41 
UniRef50_Q8TRU4 Cluster: 50S ribosomal protein L2P; n=12; Archae...    34   0.54 
UniRef50_A6QQ50 Cluster: MAP4K1 protein; n=1; Bos taurus|Rep: MA...    33   1.2  
UniRef50_A0RZ09 Cluster: Ribosomal protein L2; n=2; Crenarchaeot...    33   1.2  
UniRef50_Q97BX4 Cluster: 50S ribosomal protein L2P; n=4; Thermop...    33   1.2  
UniRef50_UPI00015BAE9D Cluster: LSU ribosomal protein L2P; n=1; ...    32   2.2  
UniRef50_Q4QAT3 Cluster: Hypothetical predicted Kelch-domain pro...    31   6.7  
UniRef50_A7RJK7 Cluster: Predicted protein; n=1; Nematostella ve...    30   8.8  
UniRef50_Q8TVX9 Cluster: Predicted DNA methylase containing a Zn...    30   8.8  
UniRef50_A7DQR3 Cluster: Ribosomal protein L2; n=1; Candidatus N...    30   8.8  

>UniRef50_Q9V3G1 Cluster: 60S ribosomal protein L8; n=71;
           Eukaryota|Rep: 60S ribosomal protein L8 - Drosophila
           melanogaster (Fruit fly)
          Length = 256

 Score =  156 bits (378), Expect = 1e-37
 Identities = 73/98 (74%), Positives = 81/98 (82%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 187
           MGRVIRAQRKGAGSVF +H KKRKGA KLRSLD+AER GYI+GVVKDIIHDPGRGAPLAV
Sbjct: 1   MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAV 60

Query: 188 VHXRDPYKFKTRKELFIAPEGLSQANLFIVXRKQLLKL 301
           VH RDPY++K RKELFIAPEG+         RK  L++
Sbjct: 61  VHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQI 98



 Score = 38.3 bits (85), Expect = 0.033
 Identities = 14/17 (82%), Positives = 17/17 (100%)
 Frame = +1

Query: 256 TGQFVYCGKKATLEVGN 306
           TGQFVYCG+KATL++GN
Sbjct: 84  TGQFVYCGRKATLQIGN 100


>UniRef50_P62917 Cluster: 60S ribosomal protein L8; n=122; cellular
           organisms|Rep: 60S ribosomal protein L8 - Homo sapiens
           (Human)
          Length = 257

 Score =  139 bits (336), Expect = 1e-32
 Identities = 65/98 (66%), Positives = 75/98 (76%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 187
           MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA 
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 188 VHXRDPYKFKTRKELFIAPEGLSQANLFIVXRKQLLKL 301
           V  RDPY+FK R ELFIA EG+         +K  L +
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNI 98



 Score = 36.3 bits (80), Expect = 0.13
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 256 TGQFVYCGKKATLEVGN 306
           TGQFVYCGKKA L +GN
Sbjct: 84  TGQFVYCGKKAQLNIGN 100


>UniRef50_Q06B43 Cluster: Ribosomal protein; n=7; Coelomata|Rep:
           Ribosomal protein - Codakia orbicularis
          Length = 234

 Score =  134 bits (325), Expect = 3e-31
 Identities = 62/98 (63%), Positives = 74/98 (75%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 187
           MGRVIR+QRKG GSVF +HTK RKG   LR++D+AERHGY+KGVVKDI+HDPGRGAPLA 
Sbjct: 1   MGRVIRSQRKGPGSVFKAHTKHRKGKAALRAVDFAERHGYVKGVVKDIVHDPGRGAPLAK 60

Query: 188 VHXRDPYKFKTRKELFIAPEGLSQANLFIVXRKQLLKL 301
           V  RDPYK+K R E FIA EG+         +K  L++
Sbjct: 61  VTFRDPYKYKMRTETFIATEGMYTGQFIYCGKKANLQI 98


>UniRef50_Q41960 Cluster: 60S ribosomal protein KD4/L2; n=3;
           Eukaryota|Rep: 60S ribosomal protein KD4/L2 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 123

 Score =  119 bits (286), Expect = 1e-26
 Identities = 58/96 (60%), Positives = 69/96 (71%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 187
           MGRVIRAQRK AGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKVAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 188 VHXRDPYKFKTRKELFIAPEGLSQANLFIVXRKQLL 295
           V  R P++FK +KELF+  E  +  +     +K  L
Sbjct: 61  VTFRHPFRFKKQKELFVXXEVCTPVSSLYCGKKATL 96


>UniRef50_Q5BZD1 Cluster: SJCHGC07017 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC07017 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 112

 Score =  107 bits (257), Expect = 5e-23
 Identities = 49/69 (71%), Positives = 57/69 (82%)
 Frame = +2

Query: 20  IRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHXR 199
           IR+QRKGAG VF +HTK RKGA +LR +D+AERHGYI+GVVK+IIHDPGRGAPLA V  R
Sbjct: 1   IRSQRKGAGGVFKAHTKHRKGAARLRPVDFAERHGYIRGVVKEIIHDPGRGAPLAKVAFR 60

Query: 200 DPYKFKTRK 226
           D Y +K  K
Sbjct: 61  DVYSYKLIK 69


>UniRef50_Q3T1K8 Cluster: Rpl8 protein; n=8; Coelomata|Rep: Rpl8
           protein - Rattus norvegicus (Rat)
          Length = 47

 Score = 79.4 bits (187), Expect = 1e-14
 Identities = 35/46 (76%), Positives = 41/46 (89%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVK 145
           MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VK
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVK 46


>UniRef50_O15574 Cluster: 60S ribosomal protein L8; n=1; Entamoeba
           histolytica|Rep: 60S ribosomal protein L8 - Entamoeba
           histolytica
          Length = 158

 Score = 52.8 bits (121), Expect = 1e-06
 Identities = 25/41 (60%), Positives = 30/41 (73%)
 Frame = +2

Query: 131 KGVVKDIIHDPGRGAPLAVVHXRDPYKFKTRKELFIAPEGL 253
           +G+VK I HDPGRGAPLA V  R+P ++   KELFI  EGL
Sbjct: 33  RGLVKSIEHDPGRGAPLARVVFRNPRQYGLDKELFICAEGL 73



 Score = 34.7 bits (76), Expect = 0.41
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +1

Query: 217 DKEGALHCSRRALTGQFVYCGKKATLEVGN 306
           DKE  + C+    +GQ++YCG KA+L +GN
Sbjct: 63  DKELFI-CAEGLYSGQYIYCGSKASLHIGN 91


>UniRef50_Q8TY93 Cluster: 50S ribosomal protein L2P; n=17;
           Euryarchaeota|Rep: 50S ribosomal protein L2P -
           Methanopyrus kandleri
          Length = 243

 Score = 47.6 bits (108), Expect = 5e-05
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGS-VFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 184
           MG+ IR QR G G   + + + + +G  + R  D  E+ G + G V +++HDP R AP+A
Sbjct: 1   MGKRIRPQRLGRGGPTYRAPSHRYRGRIEHRPYDEQEKKGKVVGKVVELLHDPARNAPVA 60

Query: 185 VVHXRDPYKFKTRKELFIAPEG 250
            V   D       + L + PEG
Sbjct: 61  RVRFED-----GEERLILVPEG 77


>UniRef50_A7R935 Cluster: Chromosome undetermined scaffold_3264,
          whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
          Chromosome undetermined scaffold_3264, whole genome
          shotgun sequence - Vitis vinifera (Grape)
          Length = 66

 Score = 42.7 bits (96), Expect = 0.002
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +2

Query: 8  MGRVIRAQRKGAGSVFVSHTKKRK 79
          MGRVIRAQRKG GS+F SHT  RK
Sbjct: 1  MGRVIRAQRKGVGSIFKSHTHHRK 24


>UniRef50_Q975I4 Cluster: 50S ribosomal protein L2P; n=10;
           Archaea|Rep: 50S ribosomal protein L2P - Sulfolobus
           tokodaii
          Length = 238

 Score = 41.9 bits (94), Expect = 0.003
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSV-FVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 184
           MG+ +  QR G G + F S + +R G  K+ +++     G   G V DI+H+PG  APLA
Sbjct: 1   MGKKLLQQRAGRGGINFRSPSWRRVGKAKIPNIE-----GEHIGKVIDIVHNPGTNAPLA 55

Query: 185 VVHXRDPYKF 214
           ++   D  KF
Sbjct: 56  LIKLDDGTKF 65


>UniRef50_Q3LWH0 Cluster: Ribosomal protein L8; n=1; Bigelowiella
           natans|Rep: Ribosomal protein L8 - Bigelowiella natans
           (Pedinomonas minutissima) (Chlorarachnion sp.(strain
           CCMP 621))
          Length = 281

 Score = 41.5 bits (93), Expect = 0.004
 Identities = 25/82 (30%), Positives = 38/82 (46%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 187
           MG++I AQRKG        + +R G    +S+   E++  IKG++     D  +  P   
Sbjct: 27  MGKIISAQRKGKIGFQKQGSSRRIGKISYKSMTNEEKYSVIKGIISKFHIDTVKKVPAIK 86

Query: 188 VHXRDPYKFKTRKELFIAPEGL 253
           +       FK   EL+IA E L
Sbjct: 87  IKFNVTKYFKNYYELYIAVEKL 108


>UniRef50_Q8ZYF5 Cluster: 50S ribosomal protein L2P; n=6;
           Thermoproteales|Rep: 50S ribosomal protein L2P -
           Pyrobaculum aerophilum
          Length = 246

 Score = 39.1 bits (87), Expect = 0.019
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +2

Query: 8   MGRVIRAQRKG-AGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 184
           MG+ I  QR+G  GS F S + KR G  +   L      GY    V DI+H+PG  AP+A
Sbjct: 1   MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPLGVISGKGY----VVDILHEPGLNAPVA 56

Query: 185 VVHXRDPYKF 214
            +   +  +F
Sbjct: 57  KIVTENGVEF 66


>UniRef50_Q9YFN1 Cluster: 50S ribosomal protein L2P; n=3;
           Archaea|Rep: 50S ribosomal protein L2P - Aeropyrum
           pernix
          Length = 238

 Score = 36.7 bits (81), Expect = 0.10
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGS-VFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 184
           MG+ +R QR G G+  + S      G  K   L        ++G V ++IHDPGR  PLA
Sbjct: 1   MGKRLRQQRAGRGTPTYRSRAHIHPGPAKYPPLS----GDTLRGKVVELIHDPGRYVPLA 56

Query: 185 VVHXRDPYKF 214
            V   D  +F
Sbjct: 57  RVVREDGVEF 66


>UniRef50_Q9AIG2 Cluster: Ribosomal protein L2; n=4; Bacteria|Rep:
           Ribosomal protein L2 - Carsonella ruddii
          Length = 235

 Score = 34.7 bits (76), Expect = 0.41
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +2

Query: 35  KGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHXRDPYK 211
           +  G + V H  K K     R +D+      IKG+V+ I +DP R A +A++   D  K
Sbjct: 18  RSRGKISVRHIGK-KHKKFYRKIDFKRDKSNIKGIVESIHYDPNRNARIALIKYLDGEK 75


>UniRef50_Q8TRU4 Cluster: 50S ribosomal protein L2P; n=12;
           Archaea|Rep: 50S ribosomal protein L2P - Methanosarcina
           acetivorans
          Length = 238

 Score = 34.3 bits (75), Expect = 0.54
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 187
           MG+ + +Q +G G+         K    LR     + +  ++G V  I HDP R AP+A 
Sbjct: 1   MGKRLISQNRGRGTP-TYRAPSHKYKADLRH-PRVDENSSLRGEVVGIEHDPARSAPIAK 58

Query: 188 VHXRDPYKFKTRKELF-IAPEGLSQANL 268
           V       F+  +ELF +A EG++  N+
Sbjct: 59  V------AFENGEELFLLASEGIAVGNI 80


>UniRef50_A6QQ50 Cluster: MAP4K1 protein; n=1; Bos taurus|Rep:
           MAP4K1 protein - Bos taurus (Bovine)
          Length = 847

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +2

Query: 68  KKRKGAPKLRSLDYAERHGYIKGVVKDII---HDPGRGAPLAVVHXRDP 205
           KKR  A K+ +     + G  +G++ D++    +PG+GAP+  +   DP
Sbjct: 287 KKRPSATKMLTHQLVSQPGLNRGLILDLLDKLRNPGKGAPVGEIEDEDP 335


>UniRef50_A0RZ09 Cluster: Ribosomal protein L2; n=2;
           Crenarchaeota|Rep: Ribosomal protein L2 - Cenarchaeum
           symbiosum
          Length = 243

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSV-FVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 184
           MG+    +R+G G + F + T  +    K  + +  E+    +G V D++H+ GR APLA
Sbjct: 1   MGKRPLVRRRGRGGMQFRAATTGKIARAKYPAFELGEQR---EGTVIDLVHERGRDAPLA 57

Query: 185 VVHXRD 202
            +   D
Sbjct: 58  KIRFED 63


>UniRef50_Q97BX4 Cluster: 50S ribosomal protein L2P; n=4;
           Thermoplasmatales|Rep: 50S ribosomal protein L2P -
           Thermoplasma volcanium
          Length = 234

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 23/58 (39%), Positives = 31/58 (53%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 181
           MG+ I  QR+G GS+ V  +   +    ++ L   E       VVKDIIH PGR +PL
Sbjct: 1   MGKHIIPQRRGHGSL-VYRSPSHRHVVDVKHLKPGEY------VVKDIIHAPGRNSPL 51


>UniRef50_UPI00015BAE9D Cluster: LSU ribosomal protein L2P; n=1;
           Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
           L2P - Ignicoccus hospitalis KIN4/I
          Length = 251

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSVFVSHTKKRKGAP-KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 184
           MG+ +R QR G G+    +    + AP +  S +  +     +G V ++ HDPGR  PLA
Sbjct: 1   MGKRLRVQRHGRGTPQWRNRGHLRVAPGRYPSPEVLKLDETYEGYVVELKHDPGRWVPLA 60


>UniRef50_Q4QAT3 Cluster: Hypothetical predicted Kelch-domain
           protein; n=3; Leishmania|Rep: Hypothetical predicted
           Kelch-domain protein - Leishmania major
          Length = 1220

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +1

Query: 163 WXRCTFG----CCTLXRSIQVQDKEGALHCSRRALTGQFVYCGKKATLE 297
           W RC F      CT  R+ +++DK  A     R+ +G    CG + TL+
Sbjct: 698 WNRCVFEKHIRSCTKSRAAEMEDKATAAAAMERSGSGWCTGCGGQVTLQ 746


>UniRef50_A7RJK7 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 551

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -3

Query: 128 CIHDVQRNLKSEV*ERLSSSSCEKRKLNRHPYAEHVL 18
           C++ + RNL S   +R++SSS  +R +  HP+  ++L
Sbjct: 197 CVY-ITRNLNSGEYKRMTSSSSRRRAIRYHPFLGNIL 232


>UniRef50_Q8TVX9 Cluster: Predicted DNA methylase containing a
           Zn-ribbon module; n=3; Methanopyrus kandleri|Rep:
           Predicted DNA methylase containing a Zn-ribbon module -
           Methanopyrus kandleri
          Length = 948

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 65  TKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHXRDPYKF-KTRKELF 235
           T +R+   +L    + + HG+++  +  I+   GRG        RD   F + R+ELF
Sbjct: 292 TIQREQVHRLSRRHFEDEHGFVRAYLAAIVEGSGRGKEYRAATDRDLEFFERAREELF 349


>UniRef50_A7DQR3 Cluster: Ribosomal protein L2; n=1; Candidatus
           Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L2
           - Candidatus Nitrosopumilus maritimus SCM1
          Length = 244

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLR--SLDYAERHGYIKGVVKDIIHDPGRGAPL 181
           MG+    +R+G G      T   K   K        +E+H   +G + D++H+ GR APL
Sbjct: 1   MGKRPLVRRRGRGGNQFRSTSTGKVGTKANYPRFPLSEQH---EGEIIDLVHERGREAPL 57

Query: 182 AVVHXRD 202
           A V   D
Sbjct: 58  AKVRFED 64


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 283,240,338
Number of Sequences: 1657284
Number of extensions: 5021031
Number of successful extensions: 11613
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 11471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11612
length of database: 575,637,011
effective HSP length: 78
effective length of database: 446,368,859
effective search space used: 10266483757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -