Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0662
         (307 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    20   6.7  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    19   8.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    19   8.8  

>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 128 IKGVVKDIIHDPGRGAPL 181
           +  VVKD + DP    P+
Sbjct: 451 LASVVKDFVFDPTERTPV 468


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = +1

Query: 148 YNP*PWXRCTFGCCTL 195
           +NP  W    F C T+
Sbjct: 299 FNPHKWLLVNFDCSTM 314


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +1

Query: 235 HCSRRALTGQFVYCGKKAT 291
           H   R     +++CGK+ T
Sbjct: 339 HTGERPFVCNWLFCGKRFT 357


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,180
Number of Sequences: 336
Number of extensions: 1197
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5518292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)