Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0662
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...   117   4e-28
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...   117   4e-28
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...   117   4e-28
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   2.5  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    24   4.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   5.8  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score =  117 bits (281), Expect = 4e-28
 Identities = 54/82 (65%), Positives = 68/82 (82%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 187
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 188 VHXRDPYKFKTRKELFIAPEGL 253
           V  R+PY ++T  E F+A EG+
Sbjct: 60  VAFRNPYHYRTDVETFVATEGM 81



 Score = 34.7 bits (76), Expect = 0.003
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +1

Query: 256 TGQFVYCGKKATLEVGN 306
           TGQFVYCGK A L VGN
Sbjct: 83  TGQFVYCGKNAALTVGN 99


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  117 bits (281), Expect = 4e-28
 Identities = 54/82 (65%), Positives = 68/82 (82%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 187
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 188 VHXRDPYKFKTRKELFIAPEGL 253
           V  R+PY ++T  E F+A EG+
Sbjct: 60  VAFRNPYHYRTDVETFVATEGM 81



 Score = 34.7 bits (76), Expect = 0.003
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +1

Query: 256 TGQFVYCGKKATLEVGN 306
           TGQFVYCGK A L VGN
Sbjct: 83  TGQFVYCGKNAALTVGN 99


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  117 bits (281), Expect = 4e-28
 Identities = 54/82 (65%), Positives = 68/82 (82%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 187
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 188 VHXRDPYKFKTRKELFIAPEGL 253
           V  R+PY ++T  E F+A EG+
Sbjct: 60  VAFRNPYHYRTDVETFVATEGM 81



 Score = 34.7 bits (76), Expect = 0.003
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +1

Query: 256 TGQFVYCGKKATLEVGN 306
           TGQFVYCGK A L VGN
Sbjct: 83  TGQFVYCGKNAALTVGN 99


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 29  QRKGAGSVFVSHTKKRKGAPKLRSLD 106
           +R+G+     +HTK+ K APK    D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 50  VFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 184
           V+   + ++KGA     LD A +H   + + +   HDP +G  LA
Sbjct: 254 VYTVASPQKKGAVFRLDLDQATQHTLGRELKRFASHDPHQGWHLA 298


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 71  SSCEKRKLNRHPYAEHVLHDP 9
           SSC+K    R  Y EHV   P
Sbjct: 725 SSCKKECGKRRMYCEHVCQSP 745


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,156,223
Number of Sequences: 5004
Number of extensions: 19881
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)