Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0662
         (307 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      128   8e-31
11_06_0075 - 19829016-19829399                                         27   2.9  
08_01_0397 - 3509186-3510291,3510322-3512335                           27   3.8  
06_03_0732 + 23965090-23965431,23965610-23965746,23967359-239674...    26   6.7  
06_03_0629 + 22920206-22920291,22920430-22920527,22920657-229207...    25   8.9  
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713...    25   8.9  
05_04_0040 + 17429281-17429371,17429433-17430150,17431387-174314...    25   8.9  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  128 bits (309), Expect = 8e-31
 Identities = 60/98 (61%), Positives = 72/98 (73%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 187
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 188 VHXRDPYKFKTRKELFIAPEGLSQANLFIVXRKQLLKL 301
           V  R P+++K +KELF+A EG+         R+  L +
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSI 98



 Score = 36.3 bits (80), Expect = 0.005
 Identities = 13/17 (76%), Positives = 16/17 (94%)
 Frame = +1

Query: 256 TGQFVYCGKKATLEVGN 306
           TGQFVYCG++ATL +GN
Sbjct: 84  TGQFVYCGRRATLSIGN 100


>11_06_0075 - 19829016-19829399
          Length = 127

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 307 HFQLQELLSXHNKQIGL*EPFGSNE 233
           HF LQELL+ H +   L EPF   E
Sbjct: 44  HFNLQELLTAHCELSCLEEPFAHEE 68


>08_01_0397 - 3509186-3510291,3510322-3512335
          Length = 1039

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 118
           +GR  RA RKG    F+S  ++R     +++L+ +E+
Sbjct: 749 VGRTGRAGRKGFAVTFISEEEERYAPDLVKALELSEQ 785


>06_03_0732 +
           23965090-23965431,23965610-23965746,23967359-23967417,
           23968817-23970135
          Length = 618

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +2

Query: 83  APKLRSLDYAERHGYIKGVVK-DIIHDPGRGAPLAVVHXRDP 205
           AP  +++D   RH       +  I+H  G  +PLA  H   P
Sbjct: 171 APFYKNIDTDHRHDATSSTTRMTIVHRHGPCSPLAAAHGEPP 212


>06_03_0629 +
           22920206-22920291,22920430-22920527,22920657-22920796,
           22921596-22921626,22922025-22922128,22922439-22922560,
           22922651-22923050,22923245-22923268
          Length = 334

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 228 SFLVLNLYGSRXCTTAKGAPLPGSWIISLT 139
           SF+++ L+ S   ++A  APL   W +S+T
Sbjct: 59  SFIMIKLWSSGGSSSAGRAPLRKYWGVSIT 88


>06_01_0926 -
           7139220-7139318,7139394-7139478,7139573-7139643,
           7139996-7140076,7140805-7140895,7141242-7141330,
           7141749-7141802,7141906-7142085,7142175-7142237,
           7142575-7142705,7142807-7142900,7143343-7143684,
           7143957-7144348,7145010-7148487,7149101-7149187,
           7149324-7149367,7149495-7149591,7150429-7150572
          Length = 1873

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 169 RCTFGCCTLXRSIQVQDKEGALHC 240
           RCT G CTL  S  V   EG L+C
Sbjct: 138 RCTHGGCTLSPSNNV-THEGKLYC 160


>05_04_0040 +
           17429281-17429371,17429433-17430150,17431387-17431435,
           17431540-17431785,17432266-17432673
          Length = 503

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 107 YAERHGYIKGVVKDIIHDPGR 169
           Y  R GYIK  VKD+  + G+
Sbjct: 143 YCSREGYIKERVKDVSDESGK 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,786,081
Number of Sequences: 37544
Number of extensions: 140545
Number of successful extensions: 304
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)