Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0662
(307 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 2e-35
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 74 2e-14
SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.3
SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09) 27 3.0
SB_15623| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 26 5.3
SB_57628| Best HMM Match : DUF1083 (HMM E-Value=7) 26 5.3
SB_9616| Best HMM Match : PTS_IIB_fruc (HMM E-Value=2.3) 26 7.0
SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.2
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 144 bits (348), Expect = 2e-35
Identities = 67/98 (68%), Positives = 76/98 (77%)
Frame = +2
Query: 8 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 187
MGRVIR QRKGAGS+F SHTK RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60
Query: 188 VHXRDPYKFKTRKELFIAPEGLSQANLFIVXRKQLLKL 301
V RDPY++K RKELF+A EG+ +K L++
Sbjct: 61 VVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQI 98
Score = 37.1 bits (82), Expect = 0.003
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +1
Query: 256 TGQFVYCGKKATLEVGN 306
TGQF+YCGKKA L++GN
Sbjct: 84 TGQFIYCGKKAALQIGN 100
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 74.1 bits (174), Expect = 2e-14
Identities = 33/56 (58%), Positives = 41/56 (73%)
Frame = +2
Query: 134 GVVKDIIHDPGRGAPLAVVHXRDPYKFKTRKELFIAPEGLSQANLFIVXRKQLLKL 301
GVVK+IIHDPGRGAPLAVV RDPY++K RKELF+A EG+ +K L++
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQI 56
Score = 37.1 bits (82), Expect = 0.003
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +1
Query: 256 TGQFVYCGKKATLEVGN 306
TGQF+YCGKKA L++GN
Sbjct: 42 TGQFIYCGKKAALQIGN 58
>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 125 IHDVQRNLKSEV*ERLSSSSCEKRKLNRHPYAEHVLHD 12
I +V + + + R++SS C KRKL R E+ + D
Sbjct: 470 IQEVVKRERKKQRNRIASSKCRKRKLEREARLENRVKD 507
>SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)
Length = 820
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Frame = +2
Query: 32 RKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVV----------KDIIHDPGRGAPL 181
R+ + ++ V H K G SL RHG + GVV K+++H G P
Sbjct: 407 REDSPAISVPHLIKDLGLVVTLSLAVKSRHGNVSGVVAVDAPLDTLMKEVVHFSTTGLPY 466
Query: 182 AVV 190
A+V
Sbjct: 467 AIV 469
>SB_15623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 50 VFVSHTKKRKGAPKLRSLDYAERHGYI-KGVVKDIIHD 160
VFV K++KG P S+D ++ G + KG+V I D
Sbjct: 61 VFVKIMKEKKGRPSTWSVDDVKKLGSLAKGLVPSEIRD 98
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 11 GRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIH 157
G+V+ ++G G+VF +HT + AP ++ L E+ + D++H
Sbjct: 553 GKVVYGAKRGKGAVFQTHTAEL--APSVQELAALEQQAQTSFI--DLMH 597
>SB_57628| Best HMM Match : DUF1083 (HMM E-Value=7)
Length = 365
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 128 CIHDVQRNLKSEV*ERLSSSSCEKRKLNRHPYAEHVLHD 12
C+HD++ K + SCEK K+NR+ + V H+
Sbjct: 105 CVHDIKLAKKKDA----VLVSCEKHKINRNKDIKGVQHN 139
>SB_9616| Best HMM Match : PTS_IIB_fruc (HMM E-Value=2.3)
Length = 462
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 50 VFVSHTKKRKGAPKLRSLDYAERHGYI-KGVVKDIIHD 160
VFV K++KG P S D ++ G + KG+V I D
Sbjct: 46 VFVKIMKEKKGRPSTWSADDVKKLGSLAKGLVPSEIRD 83
>SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 125 IHDVQRNLKSEV*ERLSSSSCEKRKLNRHPYAE 27
+ + +N + ++ RL++S C KRKL + E
Sbjct: 129 LQEAVKNERKKLRNRLAASKCRKRKLEKEAELE 161
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,915,116
Number of Sequences: 59808
Number of extensions: 160368
Number of successful extensions: 349
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 377252670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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