Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0662
         (307 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein ...   145   4e-37
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    25   0.85 
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    25   0.85 
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   2.0  

>AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein L8
           protein.
          Length = 261

 Score =  145 bits (351), Expect = 4e-37
 Identities = 68/98 (69%), Positives = 78/98 (79%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 187
           MGRVIRAQRKGAGSVF +HTKKRKG PKLR LDYAERHGY+KGVVK II DPGRGAPLAV
Sbjct: 1   MGRVIRAQRKGAGSVFRAHTKKRKGQPKLRHLDYAERHGYLKGVVKQIIQDPGRGAPLAV 60

Query: 188 VHXRDPYKFKTRKELFIAPEGLSQANLFIVXRKQLLKL 301
           V+ RDPY+F+  K+LFIA EG+         R+  L++
Sbjct: 61  VNFRDPYRFRLSKQLFIAAEGMYTGQFVYCGRRAQLQI 98



 Score = 34.7 bits (76), Expect = 8e-04
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +1

Query: 256 TGQFVYCGKKATLEVGN 306
           TGQFVYCG++A L++GN
Sbjct: 84  TGQFVYCGRRAQLQIGN 100


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 116 RHGYIKGVVKDIIHDP 163
           R+  +K ++KDI+HDP
Sbjct: 737 RYTMLKDMIKDIMHDP 752


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 116 RHGYIKGVVKDIIHDP 163
           R+  +K ++KDI+HDP
Sbjct: 737 RYTMLKDMIKDIMHDP 752


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 276 TINKLACESPSGAMKSSF 223
           T N L CE+P  AMK ++
Sbjct: 625 TNNALVCETPDDAMKVAY 642


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 295,208
Number of Sequences: 2352
Number of extensions: 6140
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 55
effective length of database: 434,619
effective search space used: 19992474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)