Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0662
         (307 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   132   5e-32
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    29   0.85 
Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical p...    28   1.5  
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    28   1.5  
AL110484-15|CAB54406.1|   74|Caenorhabditis elegans Hypothetical...    26   6.0  
Z83238-4|CAB05795.1|  341|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    25   7.9  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z36949-1|CAA85415.1|  430|Caenorhabditis elegans Hypothetical pr...    25   7.9  
U40270-1|AAC46954.1|  430|Caenorhabditis elegans ceOrc2p protein.      25   7.9  
U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...    25   7.9  
AL117207-13|CAB60393.2|  327|Caenorhabditis elegans Hypothetical...    25   7.9  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  132 bits (319), Expect = 5e-32
 Identities = 60/82 (73%), Positives = 67/82 (81%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 187
           MGR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1   MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60

Query: 188 VHXRDPYKFKTRKELFIAPEGL 253
           +  RDPYK+KT K   +A EG+
Sbjct: 61  IAFRDPYKYKTVKTTVVAAEGM 82



 Score = 31.5 bits (68), Expect = 0.12
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +1

Query: 256 TGQFVYCGKKATLEVGN 306
           TGQF++CG KA +++GN
Sbjct: 84  TGQFIHCGAKAQIQIGN 100


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 8   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 118
           +GR  R+ +KG    F +HT   K    L+ LD A++
Sbjct: 464 IGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500


>Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical
           protein Y57G11C.44 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 56  VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 181
           +S  ++RK +     LD+++  G  K ++KDI +D  +  P+
Sbjct: 1   MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -2

Query: 306 ISNFKSCFLXTINKLACESPSGAMKSSFLVLNLY 205
           ISNFK+ F  T++ +A ++P    K S++VL L+
Sbjct: 151 ISNFKTIFFGTLSPVA-KTPRLLNKRSYVVLKLF 183


>AL110484-15|CAB54406.1|   74|Caenorhabditis elegans Hypothetical
           protein Y38E10A.15 protein.
          Length = 74

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 113 ERHGYIKGVVKDIIHDPGRGAPLAVVHXRDPYK 211
           E + Y  GVV +++HD   G P ++   + P++
Sbjct: 30  EDYWYTNGVVHNVVHDNMAGGPTSLGWAQVPHR 62


>Z83238-4|CAB05795.1|  341|Caenorhabditis elegans Hypothetical
           protein T08G3.5 protein.
          Length = 341

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 119 HGYIKGVVKDIIHDPGRGAPLAVVHXRDPYKFKTRKELFI 238
           HG    +V  ++H P R A L ++  +   K  T  ++F+
Sbjct: 285 HGLFSTIVMLVVHKPYRQATLQILKIKRIEKIGTANKVFL 324


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 119 HGYIKGVVKDIIHDPGRGAPLAVVHXR 199
           HG +  +V  I+H P R + LA +H +
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 119 HGYIKGVVKDIIHDPGRGAPLAVVHXR 199
           HG +  +V  I+H P R + LA +H +
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z36949-1|CAA85415.1|  430|Caenorhabditis elegans Hypothetical
           protein F59E10.1 protein.
          Length = 430

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 298 LQELLSXHNKQIGL*EPFGSNEELLPCLELVWIAXVYNSQR 176
           LQEL++  ++ +GL      +   +  L++ W +   NSQ+
Sbjct: 302 LQELMTGDSRLLGLDARSNQSSHTMSSLDVFWKSLAVNSQK 342


>U40270-1|AAC46954.1|  430|Caenorhabditis elegans ceOrc2p protein.
          Length = 430

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 298 LQELLSXHNKQIGL*EPFGSNEELLPCLELVWIAXVYNSQR 176
           LQEL++  ++ +GL      +   +  L++ W +   NSQ+
Sbjct: 302 LQELMTGDSRLLGLDARSNQSSHTMSSLDVFWKSLAVNSQK 342


>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 5   IMGRVIRAQRKGAGSVFVSHTKKRKGAPKLR 97
           I GR+ R    G G +FV   K  KG P+LR
Sbjct: 45  IRGRLNRLPSAGVGDMFVCSVK--KGKPELR 73


>AL117207-13|CAB60393.2|  327|Caenorhabditis elegans Hypothetical
           protein Y60A3A.4 protein.
          Length = 327

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 119 HGYIKGVVKDIIHDPGRGAPLAVVHXRDPYKFKT 220
           HG    +V  I+H P R A  +++H +     KT
Sbjct: 280 HGVCTTLVMIIVHKPYRQATFSILHLKSVRPLKT 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,466,034
Number of Sequences: 27780
Number of extensions: 120376
Number of successful extensions: 289
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)