Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0662
(307 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 128 5e-31
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 128 5e-31
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 120 3e-28
At2g43660.2 68415.m05427 glycosyl hydrolase family protein 17 si... 27 1.9
At2g43660.1 68415.m05426 glycosyl hydrolase family protein 17 si... 27 1.9
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c... 26 4.3
At5g56370.2 68418.m07037 F-box family protein contains F-box dom... 26 5.7
At5g56370.1 68418.m07036 F-box family protein contains F-box dom... 26 5.7
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co... 26 5.7
At2g07715.1 68415.m00965 ribosomal protein L2, putative similar ... 26 5.7
At1g32150.1 68414.m03955 bZIP transcription factor family protei... 26 5.7
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 128 bits (310), Expect = 5e-31
Identities = 61/96 (63%), Positives = 71/96 (73%)
Frame = +2
Query: 8 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 187
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 188 VHXRDPYKFKTRKELFIAPEGLSQANLFIVXRKQLL 295
V R P++FK +KELF+A EG+ +K L
Sbjct: 61 VAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATL 96
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 256 TGQFVYCGKKATLEVGN 306
TGQF+YCGKKATL VGN
Sbjct: 84 TGQFLYCGKKATLVVGN 100
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 128 bits (310), Expect = 5e-31
Identities = 61/96 (63%), Positives = 71/96 (73%)
Frame = +2
Query: 8 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 187
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 188 VHXRDPYKFKTRKELFIAPEGLSQANLFIVXRKQLL 295
V R P++FK +KELF+A EG+ +K L
Sbjct: 61 VTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATL 96
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 256 TGQFVYCGKKATLEVGN 306
TGQF+YCGKKATL VGN
Sbjct: 84 TGQFLYCGKKATLVVGN 100
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 120 bits (288), Expect = 3e-28
Identities = 57/83 (68%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 184
MGRVIRAQRKGA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60
Query: 185 VVHXRDPYKFKTRKELFIAPEGL 253
V R P+++ +KELF+A EG+
Sbjct: 61 RVAFRHPFRYMKQKELFVAAEGM 83
Score = 33.9 bits (74), Expect = 0.022
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +1
Query: 256 TGQFVYCGKKATLEVGN 306
TGQ++YCGKKA L VGN
Sbjct: 85 TGQYLYCGKKANLMVGN 101
>At2g43660.2 68415.m05427 glycosyl hydrolase family protein 17
similar to glucan endo-1,3-beta-glucosidase precursor
SP:P52409 from [Triticum aestivum]; C terminal homology
only
Length = 123
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -2
Query: 261 ACESPSGAMKSSFLVLNLYGSRXCTTAKGAPLPGSWIISLTTP 133
AC P S+ +V+NLY GS IIS+T P
Sbjct: 70 ACYDPINLYNSASVVMNLYYQNQGRQYSKCDFEGSGIISVTDP 112
>At2g43660.1 68415.m05426 glycosyl hydrolase family protein 17
similar to glucan endo-1,3-beta-glucosidase precursor
SP:P52409 from [Triticum aestivum]; C terminal homology
only
Length = 122
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -2
Query: 261 ACESPSGAMKSSFLVLNLYGSRXCTTAKGAPLPGSWIISLTTP 133
AC P S+ +V+NLY GS IIS+T P
Sbjct: 69 ACYDPINLYNSASVVMNLYYQNQGRQYSKCDFEGSGIISVTDP 111
>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
contains Pfam profile: PF01909 nucleotidyltransferase
domain
Length = 839
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 56 VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIH-DPGRGAPLAV 187
VS+++ R+G P +RS + RH ++G D ++ + RGA + +
Sbjct: 359 VSNSRARRGFPTVRSGSSSPRHWGMRGWFHDGVNWEEPRGAEIVL 403
>At5g56370.2 68418.m07037 F-box family protein contains F-box domain
Pfam:PF00646
Length = 421
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 77 KGAPKLRSLDYAERHGY 127
K +PKLRSL E HGY
Sbjct: 305 KHSPKLRSLKLNETHGY 321
>At5g56370.1 68418.m07036 F-box family protein contains F-box domain
Pfam:PF00646
Length = 421
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 77 KGAPKLRSLDYAERHGY 127
K +PKLRSL E HGY
Sbjct: 305 KHSPKLRSLKLNETHGY 321
>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
contains Pfam profile PF00856: SET domain
Length = 1423
Score = 25.8 bits (54), Expect = 5.7
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 68 KKRKGAPKL-RSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHXRDPYKFKTRKELFIA 241
K +KG KL R +H + +KD+ D GR P+A+ ++K+LF++
Sbjct: 1122 KLQKGPNKLIRRRKPLAKHTTERSPIKDLSVDDGRPKPIALKPLEKLSSKPSKKKLFLS 1180
>At2g07715.1 68415.m00965 ribosomal protein L2, putative similar to
ribosomal protein L2 [Gossypium arboreum] GI:17933133;
contains Pfam profile PF00181: Ribosomal Proteins L2,
RNA binding domain
Length = 307
Score = 25.8 bits (54), Expect = 5.7
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 26 AQRKGAGSVFVSHTKKRKGAPK--LRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVV 190
A R +G + V H R G K LR +D +R G+V+ I +DP R + +A V
Sbjct: 20 AGRNSSGRITVFH---RGGGSKRLLRRIDL-KRSTSSMGIVESIEYDPNRSSQIAPV 72
>At1g32150.1 68414.m03955 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription factor
Length = 389
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 101 LDYAERHGYIKGVVKDIIHDPGRGAPLAVVHXRDPYKFKTRKE 229
+DY HG + G V ++ D + P V K + RK+
Sbjct: 261 MDYWSGHGNVSGAVPGVVVDGSQSQPWLQVSDEREIKRQRRKQ 303
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,175,004
Number of Sequences: 28952
Number of extensions: 108761
Number of successful extensions: 222
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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