Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0655
         (385 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    21   5.6  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    21   5.6  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    20   7.4  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       20   9.7  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        20   9.7  

>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = +1

Query: 13  SHNEIGREACMELVDAITEQPDSQERLSRI 102
           +H E+  E   E+   + E+P +  +L  +
Sbjct: 316 NHREVQEEILKEMEAVLDEEPPTYAKLQEL 345


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = +1

Query: 13  SHNEIGREACMELVDAITEQPDSQERLSRI 102
           +H E+  E   E+   + E+P +  +L  +
Sbjct: 316 NHREVQEEILKEMEAVLDEEPPTYAKLQEL 345


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 92  SLSWLSGCSVMASTS 48
           SLSW + CS+ +++S
Sbjct: 176 SLSWNNPCSINSTSS 190


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 19.8 bits (39), Expect = 9.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 107 WQGTAWAMRPTRR 145
           W+GT  +  P RR
Sbjct: 174 WEGTTLSQSPNRR 186


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 19.8 bits (39), Expect = 9.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 16  HNEIGREAC 42
           HN +GRE C
Sbjct: 132 HNLVGREGC 140


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,844
Number of Sequences: 336
Number of extensions: 862
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8014124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)