Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0655
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    29   0.25 
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    28   0.58 
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    26   1.8  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   4.1  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   5.4  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    25   5.4  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    24   7.1  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    24   9.4  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    24   9.4  

>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 29.1 bits (62), Expect = 0.25
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 40  CMELVDAITEQPDSQERLSRIVLAGNSLGNAANKKSL 150
           CM ++   T+  D +ERL R+V+A N  G       L
Sbjct: 562 CMSVLALATDLKDMRERLGRMVVASNKSGEPVTADDL 598


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 27.9 bits (59), Expect = 0.58
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 40  CMELVDAITEQPDSQERLSRIVLAGNSLGNA 132
           CM ++    +  D   RLSR+V+A +  GNA
Sbjct: 594 CMSILALSCDLNDMHSRLSRMVIANDKYGNA 624


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 40  CMELVDAITEQPDSQERLSRIVLAGNSLGNAANKKSLKDK 159
           C+EL+DA  E    +  LS ++    S   ++N+ S  +K
Sbjct: 219 CLELIDAYWESRGGKPDLSSLIRLTRSRARSSNEASYVEK 258


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 4   HELSHNEIGREACMELVDAITEQPDSQERLSRIVLAGNSLGNAANKKSL-KDKLGASAEL 180
           H+L   ++   AC+  VD  T +   Q    R VLA       +N++ +  D+ GA   +
Sbjct: 583 HDLVQLDVNTVACIFSVDRDTYKVIDQNGGVRTVLASQITMRHSNRRGVATDRNGAEIRI 642

Query: 181 SD 186
            D
Sbjct: 643 GD 644


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 85  ERLSRIVLAGNSLGNAANKKSLKDKLGASA 174
           ER+SRI+    S+GN+  + S+ D +  +A
Sbjct: 222 ERMSRILEIAQSMGNSIREPSVLDAVQMNA 251


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +3

Query: 282 SADSFPED-IRDIDTVIDVKEII 347
           S D F E+ +RD+D+V+  KE++
Sbjct: 281 SRDEFSENGVRDVDSVLTPKELV 303


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 356 SXRNNLFDVYNGVYIS 309
           S R +LFDV NGV IS
Sbjct: 441 SQRTDLFDVQNGVEIS 456


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 288 DSFPEDIRDIDTVIDVKEIISXRFWKR 368
           D+ P + + I   I VKE+     WKR
Sbjct: 17  DNVPNETKHIFDEISVKEVAVHDIWKR 43


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 31  REA-CMELVDAITEQPDSQERLSRIVLAGNSLGNAANKKSLKDK 159
           REA   E   A  ++ + +ER +    A  +   AANKK+ +DK
Sbjct: 303 REAGAREAAAAAQKKKEEEERRAAEEAAAKASAAAANKKAKEDK 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,097,408
Number of Sequences: 5004
Number of extensions: 14576
Number of successful extensions: 48
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)