Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0655
(385 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15542| Best HMM Match : Lig_chan (HMM E-Value=0) 28 2.3
SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0) 27 5.2
SB_37794| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_31295| Best HMM Match : Exo_endo_phos (HMM E-Value=7.1e-11) 27 5.2
SB_1792| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-11) 27 5.2
SB_1356| Best HMM Match : GCV_T (HMM E-Value=5.1e-40) 27 5.2
SB_84| Best HMM Match : PHD (HMM E-Value=0.0019) 27 5.2
SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21) 27 6.9
SB_34540| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38) 27 6.9
SB_12509| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
>SB_15542| Best HMM Match : Lig_chan (HMM E-Value=0)
Length = 729
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 40 CMELVDAITEQPDSQERLSRIVLAGNSLGNAANKKSLKDKLGASAELSDGE 192
C LVD +T +ER++R L+ N + N ++ + LS G+
Sbjct: 609 CKRLVDMLTHNQSLEERMNRSKLSVNKSTESVNPPREQNNIPVRVVLSQGK 659
>SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1104
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 58 AITEQPDSQERLSRIVLAGNSLGNAANKKSLKDKLGASAE 177
A T++ + + L + +AGN + NA +K+ L D+L + E
Sbjct: 900 ADTQECEIDKELEKDDVAGNEVENAVSKEELMDRLTSLVE 939
>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 3 ARAQSQRDRTRGVHGAGRCHH*AARQPGKTQPDSF 107
A Q R RT G++ AG CH + DSF
Sbjct: 1910 ANVQGPRTRTSGLNAAGTCHLQRRSSTPSSNKDSF 1944
>SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1273
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 154 LSGSSCWPHCPSCSLPKLS 98
L+ SSC CP C LP LS
Sbjct: 92 LANSSCTWICPQCGLPNLS 110
>SB_37794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 750
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 154 LSGSSCWPHCPSCSLPKLS 98
L+ SSC CP C LP LS
Sbjct: 141 LANSSCTWICPQCGLPNLS 159
>SB_31295| Best HMM Match : Exo_endo_phos (HMM E-Value=7.1e-11)
Length = 548
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 154 LSGSSCWPHCPSCSLPKLS 98
L+ SSC CP C LP LS
Sbjct: 92 LANSSCTWICPQCGLPNLS 110
>SB_1792| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-11)
Length = 476
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 154 LSGSSCWPHCPSCSLPKLS 98
L+ SSC CP C LP LS
Sbjct: 141 LANSSCTWICPQCGLPNLS 159
>SB_1356| Best HMM Match : GCV_T (HMM E-Value=5.1e-40)
Length = 1006
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 154 LSGSSCWPHCPSCSLPKLS 98
L+ SSC CP C LP LS
Sbjct: 657 LANSSCTWICPQCGLPNLS 675
>SB_84| Best HMM Match : PHD (HMM E-Value=0.0019)
Length = 402
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 154 LSGSSCWPHCPSCSLPKLS 98
L+ SSC CP C LP LS
Sbjct: 235 LANSSCTWICPQCGLPNLS 253
>SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 154 LSGSSCWPHCPSCSLPKLS 98
L+ SSC CP C LP LS
Sbjct: 141 LANSSCTWICPQCGLPNLS 159
>SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)
Length = 1080
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 154 LSGSSCWPHCPSCSLPKLSG*VFPGCRAAQ*WHLPAPCTP 35
L+ SSC C C LP S +F ++ + +P P
Sbjct: 138 LANSSCTWECTDCGLPNFSNSIFKSSKSLHVDNYYSPLNP 177
>SB_34540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 2 GTSSVTTRSDERRAWSW*MPSLSSPTARKD 91
GT ++TTRSDE + SSP RKD
Sbjct: 46 GTWAITTRSDESEGVQYENGLRSSPWRRKD 75
>SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)
Length = 1172
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 154 LSGSSCWPHCPSCSLPKLSG*VFPGCRAAQ*WHLPAPCTP 35
L+ SSC C C LP S +F ++ + +P P
Sbjct: 137 LANSSCTWECTDCGLPNFSNSIFKSSKSLHVDNYYSPLNP 176
>SB_12509| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 16 HNEIGREACMELVDAITEQPDSQER 90
H ++ RE C +L A + PD ER
Sbjct: 75 HPDVSRERCQDLEHAGPQHPDDPER 99
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,542,835
Number of Sequences: 59808
Number of extensions: 121770
Number of successful extensions: 328
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -