Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0655
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    30   0.49 
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    30   0.49 
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    30   0.49 
AL032640-2|CAA21643.2|  502|Caenorhabditis elegans Hypothetical ...    29   1.1  
Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U41552-2|AAC69104.1|  640|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U41552-1|AAC69101.2|  640|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical
           protein F15D3.1a protein.
          Length = 3674

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 76  DSQERLSRIVLAGNSLGNAANKKSLKDKLGASAEL 180
           DSQ+ + R++L G  L N +  +  K+ +GA+  L
Sbjct: 380 DSQDTVGRVLLRGQMLSNKSESEEEKESIGANLHL 414


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical
           protein F15D3.1a protein.
          Length = 3674

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 76  DSQERLSRIVLAGNSLGNAANKKSLKDKLGASAEL 180
           DSQ+ + R++L G  L N +  +  K+ +GA+  L
Sbjct: 380 DSQDTVGRVLLRGQMLSNKSESEEEKESIGANLHL 414


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
           protein.
          Length = 3674

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 76  DSQERLSRIVLAGNSLGNAANKKSLKDKLGASAEL 180
           DSQ+ + R++L G  L N +  +  K+ +GA+  L
Sbjct: 380 DSQDTVGRVLLRGQMLSNKSESEEEKESIGANLHL 414


>AL032640-2|CAA21643.2|  502|Caenorhabditis elegans Hypothetical
           protein Y43F8A.2 protein.
          Length = 502

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 76  DSQERLSRIVLAGNSLGNAANKKSLKDKLG 165
           D  E L +  +AGN LGN   K ++ DK+G
Sbjct: 284 DLLEFLKKSTVAGNKLGNIVQKCAMYDKIG 313


>Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical
           protein C47E8.5 protein.
          Length = 702

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +1

Query: 40  CMELVDAITEQPDSQERLSRIVLAGNSLG---NAANKKSLKDKLGASAELSD 186
           CMEL+D + E  D+ ++          LG   ++ N+K L D L  S    D
Sbjct: 391 CMELIDEVAEDKDNFKKFYEQFGKNLKLGIHEDSTNRKKLSDFLRYSTSAGD 442


>U41552-2|AAC69104.1|  640|Caenorhabditis elegans Hypothetical
           protein K07E3.4a protein.
          Length = 640

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 43  MELVDAITEQPDSQERLSRIVLAGNSLGN 129
           M ++   T   D QER++RIV+  +  GN
Sbjct: 273 MAILALTTSLADMQERIARIVIGSDKAGN 301


>U41552-1|AAC69101.2|  640|Caenorhabditis elegans Hypothetical
           protein K07E3.4b protein.
          Length = 640

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 43  MELVDAITEQPDSQERLSRIVLAGNSLGN 129
           M ++   T   D QER++RIV+  +  GN
Sbjct: 273 MAILALTTSLADMQERIARIVIGSDKAGN 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,184,798
Number of Sequences: 27780
Number of extensions: 89300
Number of successful extensions: 267
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)