Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0655
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   2.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   2.8  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   2.8  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   3.7  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   3.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   3.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   6.5  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    20   8.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    20   8.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 371 SSLPESXRNNLFDVYNGVYISDVFG 297
           +SLP        D++ GV ++ VFG
Sbjct: 293 ASLPPVSYTKAIDIWTGVCLTFVFG 317


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 371 SSLPESXRNNLFDVYNGVYISDVFG 297
           +SLP        D++ GV ++ VFG
Sbjct: 293 ASLPPVSYTKAIDIWTGVCLTFVFG 317


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 331 TSKRLFLXDSGREDIQV 381
           TSK + L D G E IQ+
Sbjct: 96  TSKTIILSDKGPEGIQI 112


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 331 TSKRLFLXDSGREDIQV 381
           TSK + L D G E IQ+
Sbjct: 96  TSKTVILSDKGPEGIQI 112


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 331 TSKRLFLXDSGREDIQV 381
           TSK + L D G E IQ+
Sbjct: 96  TSKTVILSDKGPEGIQI 112


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 331 TSKRLFLXDSGREDIQV 381
           TSK + L D G E IQ+
Sbjct: 96  TSKTVILSDKGPEGIQI 112


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 16  HNEIGREACME 48
           HN +G+EAC +
Sbjct: 114 HNLVGKEACKQ 124


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 16  HNEIGREACME 48
           HN +G+EAC +
Sbjct: 114 HNLVGKEACKQ 124


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 68  SVMASTSSMHASRPI 24
           S + STSS+H+  PI
Sbjct: 193 SEVESTSSLHSDMPI 207


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 68  SVMASTSSMHASRPI 24
           S + STSS+H+  PI
Sbjct: 193 SEVESTSSLHSDMPI 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,288
Number of Sequences: 438
Number of extensions: 1441
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)