Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0655
         (385 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recogniti...    27   4.3  
At5g42390.1 68418.m05161 metalloendopeptidase identical to chlor...    26   7.5  
At3g09520.1 68416.m01131 exocyst subunit EXO70 family protein co...    26   7.5  
At1g34110.1 68414.m04230 leucine-rich repeat transmembrane prote...    26   7.5  
At1g02100.3 68414.m00136 leucine carboxyl methyltransferase fami...    26   7.5  
At1g02100.2 68414.m00134 leucine carboxyl methyltransferase fami...    26   7.5  
At1g02100.1 68414.m00135 leucine carboxyl methyltransferase fami...    26   7.5  
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,...    26   9.9  

>At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related low
           similarity to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 484

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 10  LSHNEI--GREACMELVDAITEQPDSQERLSRIVLAGNSLGNAANKKSLKDKLGASAELS 183
           +SH+++    E   +  +   E    +ER+ R V+A N   NAA   ++K     +   +
Sbjct: 417 ISHSKVVDAVEQARKAAEKAHEVVKVEERIKRAVMAANRAANAARVAAVKAVQSQTFHRN 476

Query: 184 DGE 192
           DG+
Sbjct: 477 DGD 479


>At5g42390.1 68418.m05161 metalloendopeptidase identical to
           chloroplast processing enzyme metalloendopeptidase
           [Arabidopsis thaliana] gi|2827039|gb|AAC39482
          Length = 1265

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 7   ELSHNEIGREACMELVDAITEQPDSQERLSRIVL 108
           EL H++ GRE C      +T +P + +   ++ +
Sbjct: 542 ELDHSDSGREGCTVTTLTVTAEPQNWQNAVKVAV 575


>At3g09520.1 68416.m01131 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 628

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 282 SADSFPEDIRDIDTVIDVKEI 344
           S   FP+ + D+DT+I+++E+
Sbjct: 147 SYSDFPDYVEDLDTIIELEEV 167


>At1g34110.1 68414.m04230 leucine-rich repeat transmembrane protein
           kinase, putative contains similarity to receptor protein
           kinase-like protein GI:10177178 from [Arabidopsis
           thaliana]
          Length = 1045

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 46  ELVDAITEQPDSQERLSRIVLAGNSLGNAANKKSLK 153
           +L   I E+  S +RLS+++L GNSL     K   K
Sbjct: 396 KLTGRIPEELFSLKRLSKLLLLGNSLSGGLPKSVAK 431


>At1g02100.3 68414.m00136 leucine carboxyl methyltransferase family
           protein contains Pfam PF04072: Leucine carboxyl
           methyltransferase domain; similar to Leucine carboxyl
           methyltransferase  (Protein-leucine O-
           methyltransferase) (CGI-68) (SP:Q9UIC8) {Homo sapiens}
          Length = 332

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 136 NKKSLKDKLGASAELSDGEG 195
           N   L+DKLGA+A +S  EG
Sbjct: 121 NSSQLRDKLGANASISIDEG 140


>At1g02100.2 68414.m00134 leucine carboxyl methyltransferase family
           protein contains Pfam PF04072: Leucine carboxyl
           methyltransferase domain; similar to Leucine carboxyl
           methyltransferase  (Protein-leucine O-
           methyltransferase) (CGI-68) (SP:Q9UIC8) {Homo sapiens}
          Length = 306

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 136 NKKSLKDKLGASAELSDGEG 195
           N   L+DKLGA+A +S  EG
Sbjct: 121 NSSQLRDKLGANASISIDEG 140


>At1g02100.1 68414.m00135 leucine carboxyl methyltransferase family
           protein contains Pfam PF04072: Leucine carboxyl
           methyltransferase domain; similar to Leucine carboxyl
           methyltransferase  (Protein-leucine O-
           methyltransferase) (CGI-68) (SP:Q9UIC8) {Homo sapiens}
          Length = 332

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 136 NKKSLKDKLGASAELSDGEG 195
           N   L+DKLGA+A +S  EG
Sbjct: 121 NSSQLRDKLGANASISIDEG 140


>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
           putative similar to mitochondrial elongation factor Tu
           [Arabidopsis thaliana] gi|1149571|emb|CAA61511
          Length = 454

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/23 (47%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = +1

Query: 13  SHNEIGREACMELVDAITEQ-PD 78
           +++EIGR+A ++L+DA+ E  PD
Sbjct: 237 TNDEIGRQAILKLMDAVDEYIPD 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,980,073
Number of Sequences: 28952
Number of extensions: 85098
Number of successful extensions: 260
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)