Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0650
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    27   0.96 
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    25   5.1  

>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
 Frame = +3

Query: 117 FIAKYL-YL---SNYRLEYSKSNTYFSP 188
           FIAKYL Y+   +NY L Y   NT+F P
Sbjct: 253 FIAKYLEYIPSAANYPLYYQIENTFFPP 280


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 108 IXTFIAKYLYLSNYRLEYSKSNTYFSPFXI 197
           + T  A YLYL N+  EY K     +PF +
Sbjct: 319 LDTPAAVYLYLINFHREYRKFFEENAPFSV 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,102,823
Number of Sequences: 5004
Number of extensions: 16218
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)