Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0649
         (432 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   0.63 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   0.63 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   0.63 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   0.63 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   0.63 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   0.63 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   2.6  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 310 SH*PYTFHINICLSKPAEANV 248
           +H P+ FHI I   KP +A +
Sbjct: 496 NHKPFNFHITINADKPMKAAI 516


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 310 SH*PYTFHINICLSKPAEANV 248
           +H P+ FHI I   KP +A +
Sbjct: 496 NHKPFNFHITINADKPMKAAI 516


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 111 DLSSRHQRKGSCY-FICSTNIKLVCANYVVGRTPRRN 218
           +L++ +   G C  FI ++ ++ VC NYV  + P  N
Sbjct: 359 NLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMHN 395


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 111 DLSSRHQRKGSCY-FICSTNIKLVCANYVVGRTPRRN 218
           +L++ +   G C  FI ++ ++ VC NYV  + P  N
Sbjct: 328 NLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMHN 364


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 111 DLSSRHQRKGSCY-FICSTNIKLVCANYVVGRTPRRN 218
           +L++ +   G C  FI ++ ++ VC NYV  + P  N
Sbjct: 379 NLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMHN 415


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 111 DLSSRHQRKGSCY-FICSTNIKLVCANYVVGRTPRRN 218
           +L++ +   G C  FI ++ ++ VC NYV  + P  N
Sbjct: 328 NLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMHN 364


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +3

Query: 39  NARYRN*KKSR--GCVSCTLQASTA*DL--SSRHQRKGSC 146
           + R R+ KKS+    V+  +Q+S+      S+RHQR G C
Sbjct: 366 HGRGRSGKKSKFNAAVAAAVQSSSIVSSPDSARHQRIGGC 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,533
Number of Sequences: 438
Number of extensions: 2793
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)