Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0643
(435 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 94 4e-20
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 92 2e-19
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 33 0.13
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 31 0.31
06_01_0793 - 5918912-5919793,5919830-5920285 29 1.2
05_02_0037 + 5883285-5884292 29 1.6
12_02_0775 - 23049842-23051299 27 5.0
08_02_0592 + 19064025-19066596,19067036-19067084,19068530-190686... 27 5.0
07_01_0723 + 5524158-5525009 27 5.0
10_01_0111 + 1384737-1386215 27 6.6
07_01_0951 - 8001093-8001344,8001475-8001990,8002057-8002209,800... 27 6.6
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 27 6.6
01_05_0293 - 20532559-20532572,20532573-20532798,20532926-205339... 27 6.6
10_08_0147 + 15218150-15218401,15218569-15218643,15219099-152192... 27 8.7
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664... 27 8.7
05_03_0227 + 10655204-10655269,10656333-10656393,10656570-106566... 27 8.7
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 27 8.7
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 94.3 bits (224), Expect = 4e-20
Identities = 41/59 (69%), Positives = 49/59 (83%)
Frame = +1
Query: 37 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 213
MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQGY
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGY 59
Score = 68.9 bits (161), Expect = 2e-12
Identities = 31/60 (51%), Positives = 38/60 (63%)
Frame = +3
Query: 255 PVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVI 434
PV KG YGKPK G+ QLK RN +S+AEE +SYWV +DS+YKYFE+I
Sbjct: 74 PVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEII 133
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 92.3 bits (219), Expect = 2e-19
Identities = 40/58 (68%), Positives = 48/58 (82%)
Frame = +1
Query: 40 GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 213
GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQGY
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGY 164
Score = 68.9 bits (161), Expect = 2e-12
Identities = 31/60 (51%), Positives = 38/60 (63%)
Frame = +3
Query: 255 PVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVI 434
PV KG YGKPK G+ QLK RN +S+AEE +SYWV +DS+YKYFE+I
Sbjct: 179 PVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEII 238
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 32.7 bits (71), Expect = 0.13
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +3
Query: 255 PVAKGATYGKPKSHGVNQLKPTRN 326
PV KG Y KPK G+ QLK RN
Sbjct: 269 PVHKGIVYSKPKHQGITQLKFQRN 292
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 31.5 bits (68), Expect = 0.31
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -2
Query: 347 FLSNGLKVARGLQLVDTMALGLAISGTLSNWRLRPP 240
+++ G +V G++ V +ALGL ++GT W LR P
Sbjct: 587 YVALGSEVPLGVEKVHELALGLELAGTRFLWALRKP 622
>06_01_0793 - 5918912-5919793,5919830-5920285
Length = 445
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 347 FLSNGLKVARGLQLVDTMALGLAISGTLSNWRLRPP 240
+++ G +V L+ V +ALGL ++GT W LR P
Sbjct: 247 YVALGSEVPLPLEQVHELALGLELAGTRFLWALRKP 282
>05_02_0037 + 5883285-5884292
Length = 335
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +3
Query: 120 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQAPVAKG 269
AV ++ AP ++ +A +SP C R CC +P + WWP+ G
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGG 322
>12_02_0775 - 23049842-23051299
Length = 485
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 347 FLSNGLKVARGLQLVDTMALGLAISGTLSNWRLRPPR 237
+++ G +V + V +ALGL ++G W LR PR
Sbjct: 286 YVALGSEVPLRVDQVHELALGLELAGARFLWALRKPR 322
>08_02_0592 +
19064025-19066596,19067036-19067084,19068530-19068605,
19068767-19068922
Length = 950
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +2
Query: 215 LYSESVCDVVAASASC*GCHLWQAQEPWCQ-PVEAHAQPSIHC 340
+Y+ + DVV C G A EPW + P + H + C
Sbjct: 517 IYASAAADVVKVMNKCKGTKSKAAAEPWAEGPSKEHFKAKREC 559
>07_01_0723 + 5524158-5525009
Length = 283
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 305 VDTMALGLAISGTLSNWRLRPP 240
V +ALGL +SG W LRPP
Sbjct: 112 VRELALGLELSGVRFLWALRPP 133
>10_01_0111 + 1384737-1386215
Length = 492
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 347 FLSNGLKVARGLQLVDTMALGLAISGTLSNWRLR 246
+++ G +V L+ V +ALGL ++GT W LR
Sbjct: 291 YVALGSEVPLRLEQVHELALGLELAGTRFLWALR 324
>07_01_0951 -
8001093-8001344,8001475-8001990,8002057-8002209,
8002272-8002568
Length = 405
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 311 QLVDTMALGLAISGTLSNWRLRPPRRTRILNTT*P 207
++ D MALGLA SG W +RP T I++ P
Sbjct: 273 EVFDEMALGLAGSGVPFLWVIRPGFVTGIVSDALP 307
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 269 CHLWQAQEPWCQPVEAH 319
CHL Q +EPW ++AH
Sbjct: 56 CHLQQEEEPWRCQIKAH 72
>01_05_0293 -
20532559-20532572,20532573-20532798,20532926-20533960,
20534670-20534996
Length = 533
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 130 QLTRMHRAPRPTRPD 174
QLTR+H P P RPD
Sbjct: 73 QLTRLHPPPEPPRPD 87
>10_08_0147 +
15218150-15218401,15218569-15218643,15219099-15219208,
15219299-15219560
Length = 232
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 161 PQGRTKPED*ATVLNKVMLYSESVCDVVA 247
P G +P A +V+LY E +C+ VA
Sbjct: 199 PPGLPRPVSKAASSTRVLLYEEELCEAVA 227
>09_06_0328 +
22365308-22365415,22365743-22366018,22366166-22366417,
22366542-22366939,22367028-22368021,22368199-22368409,
22368515-22368749,22368874-22368996,22369190-22369310,
22369416-22369625
Length = 975
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 21 ATGC*DGCLQIYS 59
A GC DGCLQ+Y+
Sbjct: 667 AVGCEDGCLQVYT 679
>05_03_0227 +
10655204-10655269,10656333-10656393,10656570-10656672,
10656768-10656870,10656951-10657004,10657124-10657186,
10657884-10658105,10658249-10658336,10658561-10658646,
10659003-10659110,10659201-10659245,10659511-10659601,
10659662-10659765
Length = 397
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 219 YNITLFSTVA*SSGFVRPCGPGSAVHTSQLTVLPYSH 109
Y T++ +A G +RP P + + LT PY H
Sbjct: 260 YQFTVYPFIAKYFGPIRPLRPTAILSVLLLTAYPYMH 296
>01_06_1201 -
35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 81 ERCYAFFVACESMAVPSVDSYAPR 152
E+C A A +++A P DS PR
Sbjct: 27 EKCVALLAAYQTLAFPGFDSQTPR 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,534,830
Number of Sequences: 37544
Number of extensions: 256768
Number of successful extensions: 569
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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