Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0643
         (435 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             108   2e-24
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.18 
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 32   0.23 
SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39)                  30   0.95 
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)                    29   1.7  
SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_56634| Best HMM Match : Pox_A32 (HMM E-Value=0.011)                 27   8.8  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  108 bits (260), Expect = 2e-24
 Identities = 46/59 (77%), Positives = 55/59 (93%)
 Frame = +1

Query: 37  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 213
           MGAY+Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQG+
Sbjct: 1   MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGF 59



 Score = 74.1 bits (174), Expect = 4e-14
 Identities = 35/60 (58%), Positives = 41/60 (68%)
 Frame = +3

Query: 255 PVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVI 434
           PV KGATYGKP + GVN+LK  R+L+S+AEE            +SYWV QDS YKYFEVI
Sbjct: 74  PVPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYWVGQDSIYKYFEVI 133


>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 126 PSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWPQAPVAKGATYGKPKSH 296
           P  D+      AH+    P T ++PC    C  QNPC+   P     + +TYG P+ +
Sbjct: 239 PKTDANGGMQIAHQLPYPPYTGQIPCLPSSCAPQNPCS---PPGCTPQYSTYGYPQGY 293


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = +3

Query: 84  RCYAFFVA---CESMA-VPSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWP 248
           RCY   VA   C  ++  P +D+      A +    P T ++PC    C  QNPC+   P
Sbjct: 702 RCYDINVAGINCRIISHPPKIDTTGGMQMAQQLSYPPYTGQVPCLPSSCTPQNPCS---P 758

Query: 249 QAPVAKGATYGKPKSHGVNQ 308
                + +T G P++ G  Q
Sbjct: 759 PGCTPQYSTSGYPQAPGYPQ 778


>SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39)
          Length = 574

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -3

Query: 187 VFGLC--PALWAWERGAYESTDGTAILSHATKNA*HRSVFSYTTPEYICRHPS 35
           V+ +C   AL A+ +    STDGT I+ +       + VF+ T  E +C HPS
Sbjct: 403 VYDVCLPKALPAYFQCVSASTDGTCIIWNLESFVRSQIVFANTMFEAVCYHPS 455


>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
          Length = 173

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 94  RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 207
           +F ++     YR+ T+MH     +RP  + R G+R KQ
Sbjct: 16  KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53


>SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 660

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = +1

Query: 1   RHEARRLPQAAKMGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKA 180
           R +   LP  A +G Y + ++ +R +  + +R  + +RV+ Y   T        T  D A
Sbjct: 468 RRQRFALPDNANLGCYPWSKQTFRHEGPNHIRTSVHIRVYAYIMSTTQQSKITKTITDAA 527

Query: 181 RRLGYRAKQGY 213
              G  A  G+
Sbjct: 528 VITGLVAGIGW 538


>SB_56634| Best HMM Match : Pox_A32 (HMM E-Value=0.011)
          Length = 684

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +1

Query: 103 LRVRVW---QYRQLTRMHRAPRPTRPDKAR 183
           L VR+W   + R+ TR  RAP   RPD  R
Sbjct: 410 LHVRLWLPSRQRRATRESRAPNRPRPDLTR 439


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,441,972
Number of Sequences: 59808
Number of extensions: 298074
Number of successful extensions: 618
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)