Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0643
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   103   4e-23
U46669-2|AAZ86797.1|  429|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U46669-1|AAZ86798.1|  413|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical pr...    27   4.4  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  103 bits (248), Expect = 4e-23
 Identities = 42/59 (71%), Positives = 53/59 (89%)
 Frame = +1

Query: 37  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 213
           MGAY+Y+QE++RKK SD +R+LLR+R W YRQL+ +HR PRPTRP+KARRLGYRAKQG+
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGF 59



 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 30/60 (50%), Positives = 42/60 (70%)
 Frame = +3

Query: 255 PVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVI 434
           PV KG TYGKPK+HGVN+LK  ++ Q++AE             +SYWVA+DS+YK++EV+
Sbjct: 74  PVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYWVAEDSTYKFYEVV 133


>U46669-2|AAZ86797.1|  429|Caenorhabditis elegans Hypothetical
           protein C41G11.1a protein.
          Length = 429

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 383 QHTXTXAXTANTFLSNGLKVARGLQLVDTMALGLAISGTLSNWRLRPP 240
           ++T + A T      NG   A  +QL + +   + +S    NW L PP
Sbjct: 217 EYTGSLAYTERVCSKNGKMCAFVIQLNNAIDYNVTVSSLFVNWNLVPP 264


>U46669-1|AAZ86798.1|  413|Caenorhabditis elegans Hypothetical
           protein C41G11.1b protein.
          Length = 413

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 383 QHTXTXAXTANTFLSNGLKVARGLQLVDTMALGLAISGTLSNWRLRPP 240
           ++T + A T      NG   A  +QL + +   + +S    NW L PP
Sbjct: 201 EYTGSLAYTERVCSKNGKMCAFVIQLNNAIDYNVTVSSLFVNWNLVPP 248


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 61  ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 159
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296


>U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical
           protein K08D10.5 protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 61  ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 159
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,233,662
Number of Sequences: 27780
Number of extensions: 206663
Number of successful extensions: 450
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)