Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0643
         (435 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   3.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   4.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 17  VCHRLLRWVPTDI 55
           VCH  + W+PT +
Sbjct: 807 VCHNGMNWMPTHL 819


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -3

Query: 187 VFGLCPALWAWERGAYESTD 128
           +  +C  LW W R  Y  T+
Sbjct: 51  ILPVCNGLWRWIRLTYGQTN 70


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -3

Query: 187 VFGLCPALWAWERGAYESTD 128
           +  +C  LW W R  Y  T+
Sbjct: 89  ILPVCNGLWRWIRLTYGQTN 108


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/34 (23%), Positives = 14/34 (41%)
 Frame = +3

Query: 90   YAFFVACESMAVPSVDSYAPRSQAHKAGQSPKTR 191
            Y  +   ++   P+     P    H+A +  KTR
Sbjct: 1213 YTVYTKADNAEEPTSQKVPPNQLTHEASELDKTR 1246


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 181 GLCPALWAWERGAY 140
           GLCP++  ++RG +
Sbjct: 357 GLCPSMANYDRGVF 370


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 181 GLCPALWAWERGAY 140
           GLCP++  ++RG +
Sbjct: 447 GLCPSMANYDRGVF 460


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = -1

Query: 138 SQLTVLPYSHTQQKTHNIAQFFPIQLL 58
           S + +L Y H    TH ++++  +  L
Sbjct: 311 STILILNYHHRNADTHEMSEWVKVVFL 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,395
Number of Sequences: 438
Number of extensions: 2396
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)