Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0643
         (435 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)            95   2e-20
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)            95   2e-20
At3g18050.1 68416.m02296 expressed protein                             29   1.0  
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t...    27   4.1  
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff...    26   9.5  
At3g53960.1 68416.m05961 proton-dependent oligopeptide transport...    26   9.5  

>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score = 94.7 bits (225), Expect = 2e-20
 Identities = 42/59 (71%), Positives = 49/59 (83%)
 Frame = +1

Query: 37  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 213
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQG+
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGF 59



 Score = 63.3 bits (147), Expect = 7e-11
 Identities = 28/60 (46%), Positives = 38/60 (63%)
 Frame = +3

Query: 255 PVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVI 434
           PV KG  YGKP + GV QLK  R+ +S+AEE            +SYW+ +DS+YKY+E+I
Sbjct: 74  PVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEII 133


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score = 94.7 bits (225), Expect = 2e-20
 Identities = 42/59 (71%), Positives = 49/59 (83%)
 Frame = +1

Query: 37  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 213
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQG+
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGF 59



 Score = 63.3 bits (147), Expect = 7e-11
 Identities = 28/60 (46%), Positives = 38/60 (63%)
 Frame = +3

Query: 255 PVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVI 434
           PV KG  YGKP + GV QLK  R+ +S+AEE            +SYW+ +DS+YKY+E+I
Sbjct: 74  PVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEII 133


>At3g18050.1 68416.m02296 expressed protein
          Length = 335

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 175 CPALWAWERGAYESTDGTAILSHATKNA*HRSVFSYTTPE 56
           CP L AW   AY +T  +  +S A +N+   S  + TTPE
Sbjct: 82  CPVLGAWLYSAYSTTALSRSISAAARNS-SSSSAAVTTPE 120


>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
           SP|Q9Y295 Developmentally regulated GTP-binding protein
           1 (DRG 1) {Homo sapiens}; contains Pfam profiles
           PF02824: TGS domain, PF01018: GTP1/OBG family
          Length = 369

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 112 RVWQYRQLTRMHRAPRPTRPD 174
           ++W+Y  LTR++  P+   PD
Sbjct: 285 KIWEYLDLTRIYTKPKAMNPD 305


>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 818

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 61  ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRL 189
           +L  ++ S V RF   +  W Y+QLT+ +   R  R D   +L
Sbjct: 7   KLQEEEASSVTRFYNIILGWDYKQLTKENE--RKNRKDSKEKL 47


>At3g53960.1 68416.m05961 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 602

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 102 QKTHNIAQFFPIQLLNISVGTHLSSL 25
           +K H IA F  I L++I  G H  SL
Sbjct: 147 RKAHEIAFFIAIYLISIGTGGHKPSL 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,719,444
Number of Sequences: 28952
Number of extensions: 191747
Number of successful extensions: 391
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)