Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0639
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    28   0.53 
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    26   2.2  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    25   3.8  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   6.6  
SPAC24C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.6  
SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...    24   8.7  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    24   8.7  

>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 256 SNLFL-FYHLKSIVSFFFLNPEFNKVKENKSLVQFLLLCIVYKTSYLNCNSR 408
           +N FL FY + +  S+  LNP  N  +    + +++L+C+++    L   +R
Sbjct: 613 ANFFLAFYFVCNATSYSSLNPYGNWARPLFLVFEYILICLIFSQFMLAMGNR 664


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 247 TFYSNLFLFYHLKSIVSFFFLNP-EFNKVKENKSLVQFLLLCIVYKTSYLN 396
           TF+S L    HL +I  F  L+  + +K     SL   LL  +VY T YLN
Sbjct: 2   TFFSALGDMAHLAAI--FLLLHRMKKSKTCSGLSLKSHLLFLLVYVTRYLN 50


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -3

Query: 412 MIYYCNLNRTSYTLYIVTKIALMTYFL*LY*IQDLKKRTIQ*ILNDKIKINYCKMSS 242
           M+ Y ++  T Y   IV  IAL  +F   Y ++ L  RT Q  L D  +++  K+++
Sbjct: 296 MMLYVSMRLTGYMSLIVPPIALGAFFYGEY-VRKL-SRTTQDALGDLTRVSEEKLAN 350


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 169 TSQKNGVNFKDFYTFYSV-TIHIPHSMEGRGKENHLS 62
           T+  N  ++++  T  ++   H PHS   R + NHL+
Sbjct: 120 TNSSNSGSYRNSVTGATLPNAHAPHSQNRRRRSNHLN 156


>SPAC24C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 307 LNPEFNKVKENKSLVQFLLLCIVYKTSYL 393
           + PE   VKE KS+++ L   I  K ++L
Sbjct: 63  MEPEEMTVKEKKSIIEILKARIALKKAFL 91


>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 227 YVQHEGRHFTVIYFYF-II*NLLYRS 301
           +V HE RHF  IYFY   +  LL++S
Sbjct: 61  FVTHESRHF--IYFYLGTVAFLLFKS 84


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 190 RSVY*LMTSQKNGVNFKDFYTFYSVTIHIP 101
           RS+     S KN ++FK  Y+FYS     P
Sbjct: 3   RSLQFYRLSSKNLLSFKTCYSFYSTKASSP 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,730,679
Number of Sequences: 5004
Number of extensions: 32725
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)