Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0639
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749...    28   3.7  
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552...    27   6.4  
09_02_0107 + 4354470-4354589,4355058-4355156,4355292-4355596,435...    27   8.5  
06_03_0497 + 21424732-21424899,21424992-21425057,21425176-214256...    27   8.5  

>07_01_0893 +
           7484598-7484744,7484837-7484902,7494387-7494530,
           7494860-7495235,7495904-7496017,7496282-7496454,
           7496562-7496669,7497311-7497377,7497791-7497904,
           7498121-7498257,7498727-7498813,7498962-7498986,
           7499044-7499266,7499770-7499947,7500039-7500152,
           7500249-7500380,7500488-7500588,7500720-7500933
          Length = 839

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -3

Query: 286 ILNDKIKINYCKMSSFMLYVTFQ*ILFIHELPRSVY*LMTSQKNGVN-FKDFYTFYSVTI 110
           +L D +K+ +  +S    Y++ + ++  + L      +   Q N  N + +FY F+  ++
Sbjct: 598 VLMDNVKVTWSSLSK---YLSPRGVVDTYVLNAYAKKIANDQNNKENEYMNFYFFHRSSV 654

Query: 109 HIPHSMEGRGKE 74
           +   + EG GKE
Sbjct: 655 YFLKNWEGAGKE 666


>05_02_0003 +
           5520331-5520476,5520572-5520644,5520762-5520928,
           5520929-5521223,5521531-5521674,5521756-5521890,
           5522004-5522093,5523702-5523809,5523905-5523986,
           5525362-5525417,5525888-5525986,5526090-5526394,
           5526898-5527075,5527167-5527280,5527376-5527507,
           5527614-5527718
          Length = 742

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = -3

Query: 286 ILNDKIKINYCKMSSFMLYVTFQ*ILFIHELPRSVY*LMTSQKNGVN-FKDFYTFYSVTI 110
           +L D +K+ +  +S  +   + + ++  + L      +   Q N  N +++FY F+ +++
Sbjct: 571 VLMDNVKVTWSSLSKSL---SPRGVVDTYVLNAYAKKIANDQNNKENEYRNFYFFHRISV 627

Query: 109 HIPHSMEGRGKE 74
           +   + EG GKE
Sbjct: 628 YFLKNWEGVGKE 639


>09_02_0107 +
           4354470-4354589,4355058-4355156,4355292-4355596,
           4356101-4356278,4356368-4356481,4356543-4356674,
           4356784-4356888
          Length = 350

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -3

Query: 286 ILNDKIKINYCKMSSFMLYVTFQ*ILFIHELPRSVY*LMTSQKNGVN-FKDFYTFYSVTI 110
           +L D +K+ +  +S  +   + + ++  + L      +   Q N  N +++FY F+  ++
Sbjct: 179 VLMDNVKVTWSSLSKSL---SPRGVVDTYVLNAYAKKIANDQNNKENEYRNFYFFHRTSV 235

Query: 109 HIPHSMEGRGKE 74
           +   + EG GKE
Sbjct: 236 YFLKNWEGTGKE 247


>06_03_0497 + 21424732-21424899,21424992-21425057,21425176-21425634,
            21425945-21426088,21426172-21426306,21426418-21426808,
            21427256-21427428,21427508-21427615,21427715-21427810,
            21427896-21428003,21428644-21428792,21428924-21428925,
            21429071-21429207,21429538-21429842,21430922-21431099,
            21431192-21431305,21431373-21431504,21431610-21431843
          Length = 1032

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -3

Query: 286  ILNDKIKINYCKMSSFMLYVTFQ*ILFIHELPRSVY*LMTSQKNGVN-FKDFYTFYSVTI 110
            +L D +K+ +  +S  +   + + ++  + L      +   Q N  N +++FY F+  ++
Sbjct: 818  VLMDNVKVTWSSLSKSL---SPRGVVDTYVLNAYAKKIANDQNNKENEYRNFYFFHRTSV 874

Query: 109  HIPHSMEGRGKE 74
            +   + EG GKE
Sbjct: 875  YFLKNWEGAGKE 886


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,879,571
Number of Sequences: 37544
Number of extensions: 167926
Number of successful extensions: 263
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)