Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0639
(429 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16545| Best HMM Match : Cullin (HMM E-Value=0) 30 0.94
SB_5631| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_34060| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_52031| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_17493| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_10830| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_31957| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_6537| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_16545| Best HMM Match : Cullin (HMM E-Value=0)
Length = 471
Score = 29.9 bits (64), Expect = 0.94
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 295 IQ*ILNDKIKINYCKMSSFMLYVTFQ 218
+Q + N ++K+NYCK + F+ TFQ
Sbjct: 366 LQHLSNGEVKLNYCKRTYFLTVSTFQ 391
>SB_5631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 8 WYYGAILICCPSV--DTFQYTEMVLLTSTLHTMRYVYGH 118
+Y+G +++ ++ D + + ++LLT T+H Y +GH
Sbjct: 68 YYHGHVILITGTIHPDGYYHGHVILLTGTIHPDGYYHGH 106
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 8 WYYGAILICCPSV--DTFQYTEMVLLTSTLHTMRYVYGH 118
+Y+G +++ +V D + + ++L+T T+H Y +GH
Sbjct: 51 YYHGHVILITGTVHPDGYYHGHVILITGTIHPDGYYHGH 89
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 8 WYYGAILICCPSV--DTFQYTEMVLLTSTLHTMRYVYGH 118
+Y+G +++ +V D + + ++L+T T+H Y +GH
Sbjct: 102 YYHGHVILITRTVHPDGYYHGHVILITGTIHPDGYYHGH 140
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 8 WYYGAILICCPSV--DTFQYTEMVLLTSTLHTMRYVYGH 118
+Y+G +++ +V D + + ++L+T T+H Y +GH
Sbjct: 170 YYHGHVILITGTVHPDGYYHGHVILITGTVHPDGYYHGH 208
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/39 (25%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 8 WYYGAILICCPSV--DTFQYTEMVLLTSTLHTMRYVYGH 118
+Y+G +++ ++ D + + ++L+T T+H Y +GH
Sbjct: 85 YYHGHVILLTGTIHPDGYYHGHVILITRTVHPDGYYHGH 123
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 8 WYYGAILICCPSV--DTFQYTEMVLLTSTLHTMRYVYGH 118
+Y+G +++ +V D + + ++L+T T+H Y GH
Sbjct: 187 YYHGHVILITGTVHPDGYYHGHVILITGTIHPDGYYLGH 225
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/39 (25%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 8 WYYGAILICCPSV--DTFQYTEMVLLTSTLHTMRYVYGH 118
+Y+G +++ ++ D + ++L+T T+H Y +GH
Sbjct: 136 YYHGHVILITGTIHPDGYYLRHVILITGTVHPDGYYHGH 174
>SB_34060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = -3
Query: 154 GVNFKDFYTFYSVTIHIPHSMEG----RGKENHLSILKS 50
GVN DF +Y++ H P S G RG E H ++ KS
Sbjct: 12 GVNASDFSEYYTILCH-PRSEIGLHSSRGTERHNNVFKS 49
>SB_52031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = -3
Query: 154 GVNFKDFYTFYSVTIHIPHSMEG----RGKENHLSILKS 50
GVN DF +Y + H P S G RG E H ++ KS
Sbjct: 12 GVNASDFSEYYRILCH-PRSEIGLHSSRGTERHNNVFKS 49
>SB_17493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 718
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 248 VFLHVVRNISVNFIYTRTTSVRLLTYDVTKEWSKFQGFL 132
V LH RN S F++TR V + + + + S F G L
Sbjct: 443 VLLHTARNPSTPFMFTRLCPVASVIFTLGQVVSVFTGLL 481
>SB_10830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1006
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -3
Query: 142 KDFYTFYSVTIHIPHSMEGRGKENHLSILKSVH 44
K Y + T+++ M GK+NH+ + K+++
Sbjct: 933 KPQYDIWGDTVNVASRMYSTGKDNHIQVTKAMY 965
>SB_31957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 538
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 386 DVLYTIHSNKNCTNDLFSLTLLNSGFKKK 300
+V + I N+ CTN +FS L++ K K
Sbjct: 252 EVAFEIMQNEKCTNGIFSAALMHKLTKDK 280
>SB_6537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = -3
Query: 154 GVNFKDFYTFYSVTIHIPHSMEG----RGKENHLSILK 53
GVN DF +Y++ H P S G RG E H ++ K
Sbjct: 12 GVNASDFSEYYTILCH-PRSDVGLHSSRGTERHNNVFK 48
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,171,625
Number of Sequences: 59808
Number of extensions: 225697
Number of successful extensions: 349
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -