Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0639
         (429 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF228055-1|AAG43052.1|  142|Drosophila melanogaster adaptor prot...    29   2.0  
U51858-1|AAC47133.1|  228|Drosophila melanogaster boule protein ...    29   3.5  
AE014296-1587|AAN11986.1|  228|Drosophila melanogaster CG4760-PD...    29   3.5  
AE014296-1586|AAF50317.3|  228|Drosophila melanogaster CG4760-PB...    29   3.5  

>AF228055-1|AAG43052.1|  142|Drosophila melanogaster adaptor protein
           complex AP-2 smallchain sigma2 protein.
          Length = 142

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 262 LFLFYHLKSIVSFFFLNPEFNKVKENKSLVQFLLL 366
           +F FY + S+V   FL PE  +  + K L Q L L
Sbjct: 104 VFNFYKVYSVVDEMFLAPEIRETSQTKVLKQLLTL 138


>U51858-1|AAC47133.1|  228|Drosophila melanogaster boule protein
           protein.
          Length = 228

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 157 NGVNFKDFYTFYSVTIHIPHSMEGRGKENHLSILKS 50
           + + ++ FY +YSV +++P       +ENH  +L S
Sbjct: 162 SAMQYQPFYQYYSVPMNVPTIWPQNYQENHSPLLHS 197


>AE014296-1587|AAN11986.1|  228|Drosophila melanogaster CG4760-PD,
           isoform D protein.
          Length = 228

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 157 NGVNFKDFYTFYSVTIHIPHSMEGRGKENHLSILKS 50
           + + ++ FY +YSV +++P       +ENH  +L S
Sbjct: 162 SAMQYQPFYQYYSVPMNVPTIWPQNYQENHSPLLHS 197


>AE014296-1586|AAF50317.3|  228|Drosophila melanogaster CG4760-PB,
           isoform B protein.
          Length = 228

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 157 NGVNFKDFYTFYSVTIHIPHSMEGRGKENHLSILKS 50
           + + ++ FY +YSV +++P       +ENH  +L S
Sbjct: 162 SAMQYQPFYQYYSVPMNVPTIWPQNYQENHSPLLHS 197


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,075,618
Number of Sequences: 53049
Number of extensions: 298602
Number of successful extensions: 536
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1334434944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)