Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0639
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66520-7|CAA91384.1|  286|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical pr...    27   4.3  
AL132876-24|CAE17987.1|  405|Caenorhabditis elegans Hypothetical...    26   10.0 

>Z66520-7|CAA91384.1|  286|Caenorhabditis elegans Hypothetical
           protein F49E12.10 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 11  YYGAILICCPSVDTFQYTEMVLLTSTLHTMRY 106
           Y GA+L  C  V  + +T   +LT+T H   Y
Sbjct: 173 YLGAVLFRCHVVSHYIFTSYAILTTTFHHSGY 204


>Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical
           protein Y6G8.4 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +1

Query: 241 RKTFYSNLFLFYHLKSIVSFFFLNPEFNKVKENKSLVQFLLLCIVYKTSYLNCN 402
           R  F+ N+ +F      + +   NPE +++        F  L +  + SYL CN
Sbjct: 238 RYVFWQNVLVFSFKTIALPYLMENPEIDRILVGILYNDFSTLPLTIQLSYLWCN 291


>AL132876-24|CAE17987.1|  405|Caenorhabditis elegans Hypothetical
           protein Y105E8A.29 protein.
          Length = 405

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 241 RKTFYSNLFLFYHLKSIVSFFFLNPEFNKVKE 336
           RKTF+S LF F+  K+     +    F K+ E
Sbjct: 182 RKTFFSKLFTFFKKKNFFLEKYEKKIFKKISE 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,379,135
Number of Sequences: 27780
Number of extensions: 178627
Number of successful extensions: 367
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)