Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0639
         (429 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase, pu...    29   1.0  
At3g19515.1 68416.m02473 expressed protein                             28   3.1  
At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containi...    27   5.4  
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica...    26   9.4  

>At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase,
           putative similar to cytosine-5 methyltransferase (METII)
           [Arabidopsis thaliana] GI:6523846; contains Pfam
           profiles PF01426: BAH domain, PF00145: C-5
           cytosine-specific DNA methylase
          Length = 1404

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -2

Query: 71  PSQYIEKCPLK---GSKLRWRHSTKW 3
           P +YI++CP      SK++ RH TKW
Sbjct: 457 PDEYIKRCPFVTGLASKMQDRHHTKW 482


>At3g19515.1 68416.m02473 expressed protein
          Length = 507

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -2

Query: 248 VFLHVVRNISVNFIYTRTTSVRLLTYDVTKEWSKFQGF----LYFLLC 117
           +FLH   N  V  ++ R     LL    +K W KF GF    L+ L+C
Sbjct: 100 IFLH--ENPKVPCLFWRIRESTLLKLVTSKSWKKFLGFIRDQLFHLIC 145


>At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 687

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 422 IIIHDLLLQFK*DVLYTIHSN---KNCTNDLFSLTLLNSGFKKKNDT 291
           I+IH L    K D   T+ +N   +NCT +L +   L  GF K  D+
Sbjct: 574 ILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDS 620


>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
            domain-containing protein similar to SP|P46100
            Transcriptional regulator ATRX {Homo sapiens}; contains
            PFam profiles PF00271: Helicase conserved C-terminal
            domain, PF00176: SNF2 family N-terminal domain;
            non-consensus GC donor splice site at exon boundary 28614
          Length = 1457

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 362  NKNCTNDLFSLTLLNSGFKKKNDTI 288
            N+NCT     LTL++ G K  + T+
Sbjct: 1408 NRNCTRIAHQLTLISQGLKVGSSTV 1432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,449,542
Number of Sequences: 28952
Number of extensions: 150547
Number of successful extensions: 286
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)