Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0636
         (434 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.7  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       20   8.9  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 85   ISRHEILYKKAITSKFTRPRHKNKNSRA 2
            +S  EIL+ K +  K+  P  +NK  +A
Sbjct: 1228 LSSTEILFWKDLLDKYLYPIDENKEEKA 1255


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 85   ISRHEILYKKAITSKFTRPRHKNKNSRA 2
            +S  EIL+ K +  K+  P  +NK  +A
Sbjct: 1228 LSSTEILFWKDLLDKYLYPIDENKEEKA 1255


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 85   ISRHEILYKKAITSKFTRPRHKNKNSRA 2
            +S  EIL+ K +  K+  P  +NK  +A
Sbjct: 1228 LSSTEILFWKDLLDKYLYPIDENKEEKA 1255


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 85   ISRHEILYKKAITSKFTRPRHKNKNSRA 2
            +S  EIL+ K +  K+  P  +NK  +A
Sbjct: 1228 LSSTEILFWKDLLDKYLYPIDENKEEKA 1255


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 190  WTGGSSTWTAATRTA 146
            WT   STW ++T T+
Sbjct: 1035 WTTKPSTWWSSTTTS 1049


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 161 SNAHCGTLITSNAAIGRVYPQKRKVHFPP 75
           + A    LI+S+++   V+P    +H PP
Sbjct: 173 NRASVSPLISSSSSPPGVFPVDAPMHSPP 201


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 246 EDCLTELHHXFESKSPY 296
           EDCL  + H     SPY
Sbjct: 327 EDCLNYVPHISTGFSPY 343


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,496
Number of Sequences: 336
Number of extensions: 1335
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9670396
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)