Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0636
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    24   8.8  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    24   8.8  

>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -2

Query: 160 ATRTAVP*SPQTQLSDVSTLKREKCISRHEILYKKAITSKFTRPRHKNKNSR 5
           A + AVP  PQ    + S+ + E    R E    K    K T+  H N  +R
Sbjct: 200 AGQKAVPQEPQANQQETSSNQEESSFDRQETQDDKQ-KPKTTQQEHYNLRNR 250


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 9/37 (24%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 135 HLKRSYRTCLPSKEKSA-FPAMKFCTKKLLLVNSRVL 28
           H++ +YRTC   K K A +P +      ++ ++ +++
Sbjct: 391 HVRHAYRTCTADKMKKADYPYLIHSDGNIIQIDCQII 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,344,377
Number of Sequences: 5004
Number of extensions: 21035
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)