Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0636
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0427 + 3359766-3360092,3360425-3360541,3360738-3360893,336...    28   3.8  
02_05_0258 + 27222058-27223198,27223297-27223460,27224399-272245...    27   6.6  

>12_01_0427 +
           3359766-3360092,3360425-3360541,3360738-3360893,
           3361009-3361144,3361303-3361436,3361832-3361987,
           3362496-3362594,3362817-3362932,3363358-3363532,
           3363807-3363885,3363989-3364132,3364206-3364319,
           3364415-3364536,3364929-3365011,3365091-3365188,
           3365300-3365420,3366237-3366333,3366782-3366874,
           3366948-3367053,3367395-3367540,3367617-3367697,
           3367838-3367921,3367997-3368132,3368334-3368400,
           3368943-3369102
          Length = 1048

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 226 SAGQSILNLLLRWTGGSSTWTAATRTAVP*SPQTQLSDVSTLKREKCISRHEILY 62
           S+ + + NL+++   G  TW    RT     P +    V  L +EK    H++L+
Sbjct: 769 SSAELLTNLIIQGQSGQYTWECVFRT-----PLSNYDAVVLLHQEKLCRPHQVLF 818


>02_05_0258 +
           27222058-27223198,27223297-27223460,27224399-27224575,
           27224713-27224761,27224991-27225793
          Length = 777

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 6   REFLFLCRGRVNLLVIAFLYKISWREMHFSL 98
           +E + LCRGR +LL  A  ++ +  E H +L
Sbjct: 11  QEAVALCRGRADLLAAAVRHRYALAEAHAAL 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,415,775
Number of Sequences: 37544
Number of extensions: 129555
Number of successful extensions: 229
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)