Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0636
         (434 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1572| Best HMM Match : Drf_FH1 (HMM E-Value=0.27)                   31   0.31 
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             28   2.9  
SB_45976| Best HMM Match : MBT (HMM E-Value=0)                         27   8.8  

>SB_1572| Best HMM Match : Drf_FH1 (HMM E-Value=0.27)
          Length = 335

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 183 PVHLSNKFKMLCPAEQ*DRIFEDCLTELHHXFESKSPYNK*GRQXQKCP 329
           PV   ++    CP  Q  RI + C    HH    + P+ +  R  ++CP
Sbjct: 108 PVTQDDRIPKRCPLTQDGRIPKRCPVTQHHRIPKRCPFTQDDRIPKRCP 156



 Score = 29.9 bits (64), Expect = 0.95
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 183 PVHLSNKFKMLCPAEQ*DRIFEDCLTELHHXFESKSPYNK*GRQXQKCP 329
           P    ++    CP  Q DRI + CL    H    + P  +  R  ++CP
Sbjct: 144 PFTQDDRIPKRCPVTQDDRIPKRCLVTQDHRIPKRCPVTQDHRIPKRCP 192



 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +3

Query: 183 PVHLSNKFKMLCPAEQ*DRIFEDCLTELHHXFESKSPYNK*GRQXQKCP 329
           PV   ++    CP  Q  RI + C     H    + P  +  R  ++CP
Sbjct: 72  PVTQDDRIPKRCPVTQDHRIPKRCRVTQDHRIPKRCPVTQDDRIPKRCP 120


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 126  RSYRTCLPSKEKSAFPAMKFCTKKLLLVNSRVLDTRI 16
            R Y +CLPS  + AFP   F     L +  RV   R+
Sbjct: 1350 RVYPSCLPSTSEHAFPLFGFTLLVYLYLRIRVPPVRV 1386


>SB_45976| Best HMM Match : MBT (HMM E-Value=0)
          Length = 839

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 187 TGGSSTWTAATRTAVP*SPQTQLSDVSTLKREKCISRHEILYKKAITSK 41
           T  +ST T+ T T+   S  T  SD    K+E  +SR  + Y K   SK
Sbjct: 302 TSETSTSTS-TSTSTSTSSSTSTSDAIVPKKETVVSRPLVFYTKIKGSK 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,873,350
Number of Sequences: 59808
Number of extensions: 151577
Number of successful extensions: 273
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)