Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0636
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41533-7|AAA83170.1|  337|Caenorhabditis elegans Small glutamine...    28   2.5  
AF040653-1|ABC48248.1|  312|Caenorhabditis elegans F-box b prote...    27   7.8  

>U41533-7|AAA83170.1|  337|Caenorhabditis elegans Small
           glutamine-rich tetratricorepeat protein protein 1
           protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 159 AAVQVLLPPVHLSNKFKMLCPAEQ*DRIFEDCLTEL 266
           AA+++   PV+  N+    C  EQ D   +DC T L
Sbjct: 130 AAIKLNRDPVYFCNRAAAYCRLEQYDLAIQDCRTAL 165


>AF040653-1|ABC48248.1|  312|Caenorhabditis elegans F-box b protein
           protein 44 protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
 Frame = -3

Query: 312 DGLIYYKGFSIQNXDEVQ--LSSLQISDLTAXLGKAS*ICYLDXXXXXXXXXXQRALRYL 139
           D L  Y  F ++    V+  L+ + I DLT     A+    L              ++Y 
Sbjct: 119 DTLSIYNSFDVERLQLVKDSLNKIPIFDLTITTTTATNPKLLSAFLPIKTFGFNHTVQYN 178

Query: 138 DHLKRSYRTCLPSKEKSAFPAMKFCTKKLLLVNSRVL 28
                + R  LP K +S +  +     +LLL  SR L
Sbjct: 179 SSQLSALRPALPKKLESIYADISIPLNELLLTCSRTL 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,404,806
Number of Sequences: 27780
Number of extensions: 115820
Number of successful extensions: 251
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)