Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0634
(434 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 71 8e-14
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 66 3e-12
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 49 3e-07
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 48 8e-07
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 46 3e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 46 3e-06
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 46 3e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 45 4e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 44 8e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 44 1e-05
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 44 1e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 42 5e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 41 7e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 41 9e-05
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 41 9e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 40 2e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 40 2e-04
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 40 2e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 38 9e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 37 0.001
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 37 0.002
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 36 0.002
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 33 0.019
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 27 0.94
SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces ... 25 3.8
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 5.0
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 6.7
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 24 8.8
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 24 8.8
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 70.9 bits (166), Expect = 8e-14
Identities = 32/35 (91%), Positives = 34/35 (97%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
R+LITTDLLARGIDVQQVS VINYDLP+NRENYIH
Sbjct: 310 RILITTDLLARGIDVQQVSLVINYDLPANRENYIH 344
Score = 47.6 bits (108), Expect = 8e-07
Identities = 20/37 (54%), Positives = 29/37 (78%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 143
G++INFVT D R +++IE FY+T I EMP ++A+LI
Sbjct: 356 GVSINFVTNDDVRMMREIEQFYNTHIEEMPMNIADLI 392
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 65.7 bits (153), Expect = 3e-12
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
RVLI TD+ ARGIDVQQVS VINYDLP+NRENYIH
Sbjct: 312 RVLICTDIWARGIDVQQVSLVINYDLPANRENYIH 346
Score = 46.0 bits (104), Expect = 3e-06
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 143
G+AINFVT D R L+DIE +Y T I EMP ++ +++
Sbjct: 358 GVAINFVTNEDVRILRDIEQYYSTVIDEMPMNIGDMV 394
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 49.2 bits (112), Expect = 3e-07
Identities = 20/35 (57%), Positives = 26/35 (74%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
R L+ +DLL RGID+Q V+ VIN+D P N E Y+H
Sbjct: 333 RNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH 367
Score = 27.5 bits (58), Expect = 0.94
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI*GAYIFP 122
G+AI+F++ ADR L IE+ T I +P + + Y+FP
Sbjct: 379 GLAISFISWADRFNLYRIENELGTEIQPIPPSIDPSL---YVFP 419
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 47.6 bits (108), Expect = 8e-07
Identities = 16/35 (45%), Positives = 28/35 (80%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
R+ + TD+ RGID+++V+ VINYD+P + ++Y+H
Sbjct: 347 RICVATDVFGRGIDIERVNIVINYDMPDSPDSYLH 381
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 46.0 bits (104), Expect = 3e-06
Identities = 17/34 (50%), Positives = 27/34 (79%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VLI T ++ARG+DV+ + V+NYD P++ E+Y+H
Sbjct: 721 VLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVH 754
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 46.0 bits (104), Expect = 3e-06
Identities = 21/34 (61%), Positives = 24/34 (70%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VLI TDLLARGID V VIN+D P + +YIH
Sbjct: 341 VLIATDLLARGIDFHGVKMVINFDFPQSVHSYIH 374
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 46.0 bits (104), Expect = 3e-06
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+++ TD+ +RGIDV+ ++ V NYD P N E+Y+H
Sbjct: 422 IMVATDVASRGIDVKGITHVFNYDFPGNTEDYVH 455
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 45.2 bits (102), Expect = 4e-06
Identities = 16/35 (45%), Positives = 27/35 (77%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
++L+ TD+ +RG+D+ V VIN+DLP + ++YIH
Sbjct: 310 KILVATDVASRGLDIPSVQLVINFDLPRDPDDYIH 344
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 44.4 bits (100), Expect = 8e-06
Identities = 17/27 (62%), Positives = 25/27 (92%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLP 310
+VL+TT+++ARGIDV QV+ V+NYD+P
Sbjct: 404 KVLVTTNVIARGIDVSQVNLVVNYDMP 430
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 44.0 bits (99), Expect = 1e-05
Identities = 15/27 (55%), Positives = 24/27 (88%)
Frame = -3
Query: 366 LARGIDVQQVSCVINYDLPSNRENYIH 286
+ARG+D + V+CV+N+D+PSN ++YIH
Sbjct: 386 VARGLDFENVACVLNFDMPSNTKSYIH 412
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 44.0 bits (99), Expect = 1e-05
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = -3
Query: 384 LITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
L+ TD+ ARG+D+ V VINYD+P++ + YIH
Sbjct: 339 LVATDVAARGLDIPLVDVVINYDIPTDSKAYIH 371
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 41.5 bits (93), Expect = 5e-05
Identities = 14/34 (41%), Positives = 27/34 (79%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+++ T + +RG+D+ V+ VINYDLP++ ++Y+H
Sbjct: 483 IMVATAVASRGLDIPNVTHVINYDLPTDIDDYVH 516
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 41.1 bits (92), Expect = 7e-05
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = -3
Query: 384 LITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
L+ TD+ +RGID++ + VINY+ P+ E Y+H
Sbjct: 558 LLATDVASRGIDIKGIEVVINYEAPATHEVYLH 590
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 40.7 bits (91), Expect = 9e-05
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+ +DL+ARGIDV VINYD P + +Y+H
Sbjct: 490 LLVCSDLMARGIDVANTQNVINYDPPLSVRSYVH 523
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 40.7 bits (91), Expect = 9e-05
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+ TD+ RGID+ VS V+NY++ + E+Y H
Sbjct: 569 ILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTH 602
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 39.9 bits (89), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VL+ TD+ ARGID+ V+ VI+Y +P + Y+H
Sbjct: 442 VLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVH 475
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 39.9 bits (89), Expect = 2e-04
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+ TD+ ARG+D+ V V+ YD P + ++Y+H
Sbjct: 499 ILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 39.9 bits (89), Expect = 2e-04
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VL+ TD+ ARG+D+ +V VIN P E+Y+H
Sbjct: 469 VLVATDVAARGLDIPKVQLVINVTFPLTIEDYVH 502
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 37.5 bits (83), Expect = 9e-04
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+ TD+ +RGID+ ++ VINYD P + ++H
Sbjct: 399 LLVVTDVASRGIDIPLLANVINYDFPPQPKVFVH 432
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 37.1 bits (82), Expect = 0.001
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+ T++ ARG+D+ V ++ YD P + +YIH
Sbjct: 389 ILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIH 422
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VL TD++ARG+D V VI D P + + YIH
Sbjct: 338 VLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIH 371
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 36.3 bits (80), Expect = 0.002
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L TD++ARG+D ++ V+ PSN ++YIH
Sbjct: 346 ILFATDVVARGMDFPNITQVVQITGPSNTDDYIH 379
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 33.1 bits (72), Expect = 0.019
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VL TTD+ +RG+D+ V V+ D P + +++ H
Sbjct: 312 VLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSH 345
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 27.5 bits (58), Expect = 0.94
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -1
Query: 155 GQPHLRRLHFSDLYSVSCVLLRYL*EDLPTEPVKRT 48
G P L+ L F DL V L L +LPTEP K+T
Sbjct: 203 GDP-LKDLLFKDLRPVQTKELESLFAELPTEPPKQT 237
>SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 274
Score = 25.4 bits (53), Expect = 3.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 314 CHPTVKIIFTGLDEVD 267
C+P V + F G DEVD
Sbjct: 85 CYPNVDVSFDGADEVD 100
>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 92 AIERRTQNINRKNVGAL 142
A+E+ QNINRK+V A+
Sbjct: 291 AVEKILQNINRKDVNAI 307
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENY 292
++++ T G+D V VI++ P + E Y
Sbjct: 795 KIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGY 827
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 24.2 bits (50), Expect = 8.8
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 41 YPKCVSQAQWVDLLINIAIERRTQNINRKNVGALDEVGHIT 163
Y + V AQW+ + + R T+ ++N+ ++DE +T
Sbjct: 1002 YDEAVRDAQWMAEMDMESEARPTRGRPKRNIASVDETPALT 1042
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 24.2 bits (50), Expect = 8.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 77 DLPTEPVKRTLDTSMWK 27
DLP+E K T + S+WK
Sbjct: 172 DLPSEVTKDTAEESVWK 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,247
Number of Sequences: 5004
Number of extensions: 33447
Number of successful extensions: 102
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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