Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0634
(434 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 64 4e-11
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 64 5e-11
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 64 5e-11
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 64 5e-11
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 54 5e-08
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 51 3e-07
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 51 3e-07
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 51 3e-07
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 49 1e-06
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 49 1e-06
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 49 1e-06
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 48 2e-06
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 48 4e-06
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 47 5e-06
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 47 5e-06
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 47 5e-06
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 47 5e-06
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 47 6e-06
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 47 6e-06
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 47 6e-06
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 47 6e-06
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 46 1e-05
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 46 1e-05
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 45 2e-05
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 45 2e-05
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 45 3e-05
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 45 3e-05
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 45 3e-05
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 45 3e-05
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 44 3e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 44 3e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 44 3e-05
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 44 3e-05
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 44 4e-05
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 44 6e-05
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 43 8e-05
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 43 1e-04
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 43 1e-04
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 42 1e-04
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 42 1e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 41 3e-04
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 41 3e-04
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 41 3e-04
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 40 5e-04
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 40 7e-04
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 40 7e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 40 7e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 40 7e-04
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 39 0.001
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 39 0.002
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 38 0.002
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 38 0.004
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 37 0.005
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 37 0.005
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 37 0.005
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 37 0.007
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 34 0.036
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 34 0.048
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 33 0.063
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 33 0.083
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 33 0.11
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 32 0.19
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 30 0.59
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 29 1.4
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 29 1.4
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 29 1.4
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 29 1.8
At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kina... 29 1.8
At1g01770.1 68414.m00096 expressed protein 27 4.1
At1g73850.1 68414.m08550 expressed protein 27 7.2
At5g39360.1 68418.m04768 circadian clock coupling factor-related... 26 9.5
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 64.1 bits (149), Expect = 4e-11
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
RVLITTD+ ARGIDVQQVS VINYDLP+NRE YIH
Sbjct: 326 RVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH 360
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 143
G+AINFV D + L+DIE +Y T I EMP +VA+LI
Sbjct: 372 GVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 408
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 63.7 bits (148), Expect = 5e-11
Identities = 29/35 (82%), Positives = 32/35 (91%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
RVLITTDLLARGIDVQQVS VIN+DLP+ ENY+H
Sbjct: 330 RVLITTDLLARGIDVQQVSLVINFDLPTQPENYLH 364
Score = 46.4 bits (105), Expect = 8e-06
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 143
G+AINFVT D R L DI+ FY+ + E+PS+VA+L+
Sbjct: 376 GVAINFVTRDDERMLFDIQKFYNVVVEELPSNVADLL 412
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 63.7 bits (148), Expect = 5e-11
Identities = 29/35 (82%), Positives = 32/35 (91%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
RVLITTDLLARGIDVQQVS VIN+DLP+ ENY+H
Sbjct: 332 RVLITTDLLARGIDVQQVSLVINFDLPTQPENYLH 366
Score = 45.2 bits (102), Expect = 2e-05
Identities = 18/37 (48%), Positives = 28/37 (75%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 143
G+AINF+T D R + DI+ FY+ + E+PS+VA+L+
Sbjct: 378 GVAINFMTSEDERMMADIQRFYNVVVEELPSNVADLL 414
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 63.7 bits (148), Expect = 5e-11
Identities = 29/35 (82%), Positives = 32/35 (91%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
RVLITTDLLARGIDVQQVS VIN+DLP+ ENY+H
Sbjct: 330 RVLITTDLLARGIDVQQVSLVINFDLPTQPENYLH 364
Score = 45.6 bits (103), Expect = 1e-05
Identities = 20/37 (54%), Positives = 29/37 (78%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 143
G+AINFVT D+R L DI+ FY+ + E+PS+VA+L+
Sbjct: 376 GVAINFVTLDDQRMLFDIQKFYNVVVEELPSNVADLL 412
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 53.6 bits (123), Expect = 5e-08
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
RVLI +D+ ARGIDVQ VS VINYD+P+N E YIH
Sbjct: 313 RVLIASDVWARGIDVQTVSHVINYDIPNNPELYIH 347
Score = 42.3 bits (95), Expect = 1e-04
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDV 155
G+AINFV +D + LKDIE Y T I EMP+D+
Sbjct: 359 GVAINFVKSSDMKDLKDIERHYGTKIREMPADL 391
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 51.2 bits (117), Expect = 3e-07
Identities = 18/35 (51%), Positives = 29/35 (82%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
R+L+ TDL+ RGID+++V+ VINYD+P + + Y+H
Sbjct: 340 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLH 374
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 51.2 bits (117), Expect = 3e-07
Identities = 18/35 (51%), Positives = 29/35 (82%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
R+L+ TDL+ RGID+++V+ VINYD+P + + Y+H
Sbjct: 257 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLH 291
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 51.2 bits (117), Expect = 3e-07
Identities = 18/35 (51%), Positives = 29/35 (82%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
R+L+ TDL+ RGID+++V+ VINYD+P + + Y+H
Sbjct: 340 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLH 374
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 49.2 bits (112), Expect = 1e-06
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
++ TD+ ARG+DV+ + CV+NYD P+ E+YIH
Sbjct: 463 IMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIH 496
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 49.2 bits (112), Expect = 1e-06
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
R L+ TDL RGID+Q V+ VIN+D P N E Y+H
Sbjct: 420 RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLH 454
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 49.2 bits (112), Expect = 1e-06
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
R L+ TDL RGID+Q V+ VIN+D P N E Y+H
Sbjct: 420 RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLH 454
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 48.4 bits (110), Expect = 2e-06
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VLI TD++ARG+D + ++CVINYD P + YIH
Sbjct: 433 VLIATDVIARGMDFKGINCVINYDFPDSASAYIH 466
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 47.6 bits (108), Expect = 4e-06
Identities = 17/34 (50%), Positives = 27/34 (79%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+ TD+ +RG+D+ V VINYD+P+N ++YIH
Sbjct: 313 ILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIH 346
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 47.2 bits (107), Expect = 5e-06
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VLI TD+ ARG+D++ + VINYD P+ E+Y+H
Sbjct: 732 VLIATDVAARGLDIKDIRVVINYDFPTGVEDYVH 765
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 47.2 bits (107), Expect = 5e-06
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VL+ TD+ ARG+DV+ + V+NYD P+ E+Y+H
Sbjct: 455 VLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVH 488
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 47.2 bits (107), Expect = 5e-06
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VL+ TD+ ARG+DV+ + V+NYD P+ E+Y+H
Sbjct: 455 VLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVH 488
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 47.2 bits (107), Expect = 5e-06
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VL+ TD+ ARG+DV+ + V+NYD P+ E+Y+H
Sbjct: 455 VLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVH 488
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 46.8 bits (106), Expect = 6e-06
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VL+ TD+ ARG+DV+ + V+NYD P+ E+Y+H
Sbjct: 526 VLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVH 559
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 46.8 bits (106), Expect = 6e-06
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
R L+ TDL RGID+Q V+ VIN+D P E+Y+H
Sbjct: 413 RNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLH 447
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 143
G+A+N VT DR + E T I +PS++ I
Sbjct: 459 GLAVNLVTYEDRFKMYQTEQELGTEIKPIPSNIDQAI 495
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 46.8 bits (106), Expect = 6e-06
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
R L+ TDL RGID+Q V+ VIN+D P E+Y+H
Sbjct: 413 RNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLH 447
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 143
G+A+N VT DR + E T I +PS++ I
Sbjct: 459 GLAVNLVTYEDRFKMYQTEQELGTEIKPIPSNIDQAI 495
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 46.8 bits (106), Expect = 6e-06
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
R L+ TDL RGID+Q V+ VIN+D P E+Y+H
Sbjct: 443 RNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLH 477
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 46.0 bits (104), Expect = 1e-05
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+ TD+ ARG+DV V VI+Y+LP+N E ++H
Sbjct: 413 ILVATDVAARGLDVPNVDLVIHYELPNNTETFVH 446
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 45.6 bits (103), Expect = 1e-05
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+ TD+ ARG+DV V +I+Y+LP+N E ++H
Sbjct: 401 ILVATDVAARGLDVPNVDLIIHYELPNNTETFVH 434
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 45.2 bits (102), Expect = 2e-05
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+LI TDL+ARGID++ V +I+Y LP + E Y+H
Sbjct: 555 ILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVH 588
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 45.2 bits (102), Expect = 2e-05
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
++ TD+ ARG+DV+ V VINYD P + E+Y+H
Sbjct: 397 IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 430
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 44.8 bits (101), Expect = 3e-05
Identities = 15/34 (44%), Positives = 28/34 (82%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+ TD+ ARG+D+ V+ V+N+DLP++ ++Y+H
Sbjct: 458 ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVH 491
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 44.8 bits (101), Expect = 3e-05
Identities = 15/34 (44%), Positives = 28/34 (82%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+ TD+ ARG+D+ V+ V+N+DLP++ ++Y+H
Sbjct: 461 ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVH 494
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 44.8 bits (101), Expect = 3e-05
Identities = 15/34 (44%), Positives = 28/34 (82%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+ TD+ ARG+D+ V+ V+N+DLP++ ++Y+H
Sbjct: 461 ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVH 494
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 44.8 bits (101), Expect = 3e-05
Identities = 15/34 (44%), Positives = 28/34 (82%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+ TD+ ARG+D+ V+ V+N+DLP++ ++Y+H
Sbjct: 471 ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVH 504
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 44.4 bits (100), Expect = 3e-05
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VL+ TD+ ++G+D + VINYD+P+ ENY+H
Sbjct: 450 VLVATDVASKGLDFPDIQHVINYDMPAEIENYVH 483
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 44.4 bits (100), Expect = 3e-05
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+T+D+ ARG+D VS V+ LPS+RE YIH
Sbjct: 391 ILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIH 424
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 44.4 bits (100), Expect = 3e-05
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+T+D+ ARG+D VS V+ LPS+RE YIH
Sbjct: 693 ILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIH 726
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 44.4 bits (100), Expect = 3e-05
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VL+ TD++ RGID+ V+ VINYD+P + E Y H
Sbjct: 629 VLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTH 662
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 44.0 bits (99), Expect = 4e-05
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VL+ TD+ ++G+D + VINYD+P ENY+H
Sbjct: 401 VLVATDVASKGLDFPDIQHVINYDMPGEIENYVH 434
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 43.6 bits (98), Expect = 6e-05
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VL++TD+ ARG+D +V C+I YD P Y+H
Sbjct: 402 VLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVH 435
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 43.2 bits (97), Expect = 8e-05
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+ TD+ +RG+D+ V VINYD+P + +Y+H
Sbjct: 355 ILLATDVASRGLDIPTVDLVINYDIPRDPRDYVH 388
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 42.7 bits (96), Expect = 1e-04
Identities = 15/34 (44%), Positives = 27/34 (79%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+LI T + ARG+DV+++ V+N+D P++ E+Y+H
Sbjct: 667 LLIATSVAARGLDVKELELVVNFDAPNHYEDYVH 700
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 42.7 bits (96), Expect = 1e-04
Identities = 15/34 (44%), Positives = 27/34 (79%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+LI T + ARG+DV+++ V+N+D P++ E+Y+H
Sbjct: 829 LLIATSVAARGLDVKELELVVNFDAPNHYEDYVH 862
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 42.3 bits (95), Expect = 1e-04
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VL+ TD+ +RG+D+ V VI+Y+LP++ E ++H
Sbjct: 403 VLVATDVASRGLDIPNVDLVIHYELPNDPETFVH 436
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 42.3 bits (95), Expect = 1e-04
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+ TD+ ARG+D+ V VINY P E+Y+H
Sbjct: 419 LLVATDVAARGLDIPDVEVVINYTFPLTTEDYVH 452
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 41.1 bits (92), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+T+D+ ARG+D V+ V+ LP +RE YIH
Sbjct: 365 ILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIH 398
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 41.1 bits (92), Expect = 3e-04
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+VL+ +D L RG+DV+ V+ VINYD+P + +IH
Sbjct: 380 QVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIH 414
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 41.1 bits (92), Expect = 3e-04
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRE 298
+VLI TD++ARG D Q+V+ V+NY+LP+ E
Sbjct: 392 QVLIATDVIARGFDQQRVNLVVNYNLPTKYE 422
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 40.3 bits (90), Expect = 5e-04
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VLI TD+ ARG+D++ + V+NYD+ + + ++H
Sbjct: 526 VLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVH 559
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 39.9 bits (89), Expect = 7e-04
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L++TD+ ARGID+ + + + N+DLP +Y+H
Sbjct: 394 LLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLH 427
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 39.9 bits (89), Expect = 7e-04
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L++TD+ ARGID+ + + + N+DLP +Y+H
Sbjct: 237 LLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLH 270
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 39.9 bits (89), Expect = 7e-04
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+T+D+ ARG++ V+ VI +PS+RE YIH
Sbjct: 687 ILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIH 720
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 39.9 bits (89), Expect = 7e-04
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+T+D+ ARG++ V+ VI +PS+RE YIH
Sbjct: 640 ILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIH 673
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 39.1 bits (87), Expect = 0.001
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+VL+T +L ARG+DV + V+N +LP++ +Y H
Sbjct: 459 KVLVTNELSARGLDVAECDLVVNLELPTDAVHYAH 493
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 38.7 bits (86), Expect = 0.002
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+ TD+ ARG+D+ V +I YD P YIH
Sbjct: 387 ILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIH 420
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 38.3 bits (85), Expect = 0.002
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -3
Query: 384 LITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
LI TD+ ARG+D+ V VINY P ++Y+H
Sbjct: 466 LIATDVAARGLDIIGVQTVINYACPREIDSYVH 498
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 37.5 bits (83), Expect = 0.004
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+L+ T++ ARG+D V ++ YD P N +YIH
Sbjct: 453 ILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIH 486
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 37.1 bits (82), Expect = 0.005
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VL++T +L RG+D+ V VI +D+PS + YIH
Sbjct: 411 VLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIH 444
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 37.1 bits (82), Expect = 0.005
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VL++T +L RG+D+ V VI +D+PS + YIH
Sbjct: 274 VLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIH 307
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 37.1 bits (82), Expect = 0.005
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+LI TD+ ARGID+ + VIN+D P + ++H
Sbjct: 324 LLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVH 357
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 36.7 bits (81), Expect = 0.007
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
VL+ TD+ ARG+D+ + V+ YD P + + +IH
Sbjct: 322 VLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIH 355
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 34.3 bits (75), Expect = 0.036
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -3
Query: 384 LITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
L+ TDL ARG+D+ V V+ +D P N +Y+H
Sbjct: 426 LVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLH 457
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 33.9 bits (74), Expect = 0.048
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
V + TD ARG+DV VS VI D S+ +++H
Sbjct: 476 VFVCTDAAARGVDVPNVSHVIQADFASSAVDFLH 509
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 33.5 bits (73), Expect = 0.063
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 366 LARGIDVQQVSCVINYDLPSNRENYIH 286
+ RGID ++V VIN+D+P + YIH
Sbjct: 396 VVRGIDFKKVHTVINFDMPQSVTGYIH 422
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 33.1 bits (72), Expect = 0.083
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQ-VSCVINYDLPSNRENYIH 286
VL TD+LARG+D + V V+ D P + +YIH
Sbjct: 370 VLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIH 404
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 32.7 bits (71), Expect = 0.11
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 384 LITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
L+ T++ ARG+D+ V +I + P E YIH
Sbjct: 400 LVATNVAARGLDINDVQLIIQCEPPREVEAYIH 432
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 31.9 bits (69), Expect = 0.19
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 384 LITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
L+ TD+ ARG+D+ + V+ YD P + + H
Sbjct: 332 LLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNH 364
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 30.3 bits (65), Expect = 0.59
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
RVL+T +LL G++ + +++ +LP++ +Y H
Sbjct: 667 RVLVTNELLTWGLEDAECDLMVDLELPTDAVHYAH 701
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYI 289
+L+ T + G+D+Q VI YDLP ++I
Sbjct: 574 LLVATKVGEEGLDIQTCCLVIRYDLPETVTSFI 606
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 384 LITTDLLARGIDVQQVSCVINYDLPSNRENYI 289
L+ TD +RGID V V+ +D P + Y+
Sbjct: 698 LVCTDRASRGIDFSGVDHVVLFDFPRDPSEYV 729
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 390 RVLITTDLLARGIDVQQVSCVINYDLPSNRENYI 289
RV++ T G+D V VI++ +P + E Y+
Sbjct: 538 RVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYV 571
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENY 292
+L TD++ G V SC++ +DLP +Y
Sbjct: 424 LLFITDVVEEGFQVPDCSCMVCFDLPKTMCSY 455
>At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 772
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 62 AQWVDLLINIAIERRTQNINRKNVGALDEVGHITGHFNDTSVV-EVLNILQCSPVS 226
++W + + + R + RKN L VG TG F + ++ +++ILQ +S
Sbjct: 676 SRWASIRLGTNMPARAERTMRKNDSELQLVGEPTGEFYEVVMIFGIIDILQDYDIS 731
>At1g01770.1 68414.m00096 expressed protein
Length = 632
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 62 AQWVDLLINIAIERRTQNINRKNVGALDEVG 154
++W+ LL+ +A+ER T I N+GA+D G
Sbjct: 86 SEWMQLLLPLAVERGTCIIT--NMGAIDPSG 114
>At1g73850.1 68414.m08550 expressed protein
Length = 575
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 61 GSVGRSSYKYRNRTQDTEYKSEKCRRLR*GWPHHWAFQRY 180
GS +SS ++RN + + S RR W + FQ+Y
Sbjct: 206 GSTSKSSSEWRNSVKTDDPFSTSSRRSCPKWESYTVFQKY 245
>At5g39360.1 68418.m04768 circadian clock coupling factor-related
similar to circadian clock coupling factor ZGT
[Nicotiana tabacum] GI:14210079
Length = 249
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 40 VSKVRFTGSVGRSSYKYRNRTQDTEYKSEKCRRL 141
V + RF+ + GRS + RT D Y S+ C L
Sbjct: 116 VHRTRFSRTSGRSFLPPQCRTDDILYVSDPCEHL 149
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,066,269
Number of Sequences: 28952
Number of extensions: 166044
Number of successful extensions: 461
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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